3EEJ Oxidoreductase date Sep 04, 2008
title Candida Glabrata Dihydrofolate Reductase Complexed With 2,4- [3-Methyl-3-(3-Methoxy-5-Phenylphenyl)Prop-1-Ynyl]-6- Methylpyrimidine(Ucp111d) And Nadph
authors J.Liu, A.Anderson
compound source
Molecule: Dihydrofolate Reductase
Chain: A, B
Engineered: Yes
 Organism_scientific: Candida Glabrata
Organism_common: Yeast
Organism_taxid: 5478
Gene: Cagl0j03894g
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 41
R_factor 0.167 R_Free 0.229
crystal
cell
length a length b length c angle alpha angle beta angle gamma
42.871 42.871 231.485 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.11 Å
ligand 53R, NDP enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceProbing the active site of Candida glabrata dihydrofolate reductase with high resolution crystal structures and the synthesis of new inhibitors., Liu J, Bolstad DB, Smith AE, Priestley ND, Wright DL, Anderson AC, Chem Biol Drug Des. 2009 Jan;73(1):62-74. PMID:19152636
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (89 Kb) [Save to disk]
  • Biological Unit Coordinates (3eej.pdb1.gz) 42 Kb
  • Biological Unit Coordinates (3eej.pdb2.gz) 42 Kb
  • LPC: Ligand-Protein Contacts for 3EEJ
  • CSU: Contacts of Structural Units for 3EEJ
  • Structure Factors (369 Kb)
  • Retrieve 3EEJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3EEJ from S2C, [Save to disk]
  • Re-refined 3eej structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
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  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3EEJ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3EEJ, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3eej_B] [3eej] [3eej_A]
  • SWISS-PROT database: [Q6FPH0]
  • Domain organization of [Q6FPH0_CANGA] by SWISSPFAM
    • Other resources with information on 3EEJ
  • Community annotation for 3EEJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
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