3EG1 Transferase Signaling Protein date Sep 10, 2008
title Crystal Structure Of The N114q Mutant Of Abl-Sh3 Domain Comp A Designed High-Affinity Peptide Ligand: Implications For S Interactions
authors A.Camara-Artigas
compound source
Molecule: Proto-Oncogene Tyrosine-Protein Kinase Abl1
Chain: A, B
Fragment: Sh3 Domain, Residues 60-121
Synonym: P150, C- Abl, Abelson Murine Leukemia Viral Oncoge 1;
Ec: 2.7.10.2
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Strain: Pbat4
Gene: Abl1, Abl, Jtk7
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector: Pbat4

Molecule: P41 Peptide
Chain: C, D
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
Other_details: The Author States That The P41 Peptide Is A A Group Of Peptide Ligands Designed To Bind Specifically Th Domain.
symmetry Space Group: P 21 21 21
R_factor 0.185 R_Free 0.248
crystal
cell
length a length b length c angle alpha angle beta angle gamma
45.996 47.636 55.662 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.85 Å
ligand ACE, SO4 enzyme Transferase E.C.2.7.10.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceRole of interfacial water molecules in proline-rich ligand recognition by the Src homology 3 domain of Abl., Palencia A, Camara-Artigas A, Pisabarro MT, Martinez JC, Luque I, J Biol Chem. 2010 Jan 22;285(4):2823-33. Epub 2009 Nov 10. PMID:19906645
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (30 Kb) [Save to disk]
  • Biological Unit Coordinates (3eg1.pdb1.gz) 23 Kb
  • Biological Unit Coordinates (3eg1.pdb2.gz) 12 Kb
  • Biological Unit Coordinates (3eg1.pdb3.gz) 12 Kb
  • LPC: Ligand-Protein Contacts for 3EG1
  • CSU: Contacts of Structural Units for 3EG1
  • Structure Factors (173 Kb)
  • Retrieve 3EG1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3EG1 from S2C, [Save to disk]
  • Re-refined 3eg1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3EG1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3EG1
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3EG1, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3eg1_A] [3eg1_B] [3eg1_D] [3eg1] [3eg1_C]
  • SWISS-PROT database: [P00519]
  • Domain organization of [ABL1_HUMAN] by SWISSPFAM
  • Domain found in 3EG1: [SH3 ] by SMART
  • Other resources with information on 3EG1
  • Community annotation for 3EG1 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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