3EGN Splicing date Sep 11, 2008
title C-Terminal Rna Recognition Motif Of The U11u12 65k Protein
authors C.Netter, M.C.Wahl
compound source
Molecule: Rna-Binding Protein 40
Chain: A
Fragment: 65k C-Terminal Rrm, Unp Residues 380-517
Synonym: Rna-Binding Motif Protein 40, Rna-Binding Region-C Protein 3, U11u12 Small Nuclear Ribonucleoprotein 65 Kda P U11u12 Snrnp 65 Kda Protein, U11u12-65k;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: U11u12 Snrnp 65k
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta 2 (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-6p-1
symmetry Space Group: C 1 2 1
R_factor 0.194 R_Free 0.236
crystal
cell
length a length b length c angle alpha angle beta angle gamma
90.973 33.499 49.312 90.00 96.64 90.00
method X-Ray Diffractionresolution 2.50 Å
note 3EGN is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceFunctional stabilization of an RNA recognition motif by a noncanonical N-terminal expansion., Netter C, Weber G, Benecke H, Wahl MC, RNA. 2009 May 15. PMID:19447915
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (26 Kb) [Save to disk]
  • Biological Unit Coordinates (3egn.pdb1.gz) 21 Kb
  • CSU: Contacts of Structural Units for 3EGN
  • Likely Quarternary Molecular Structure file(s) for 3EGN
  • Structure Factors (39 Kb)
  • Retrieve 3EGN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3EGN from S2C, [Save to disk]
  • Re-refined 3egn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3EGN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3EGN
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3EGN, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3egn] [3egn_A]
  • SWISS-PROT database: [Q96LT9]
  • Domain organization of [RBM40_HUMAN] by SWISSPFAM
  • Domain found in 3EGN: [RRM ] by SMART
  • Other resources with information on 3EGN
  • Community annotation for 3EGN at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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