3EJU	Hydrolase	date	Sep 18, 2008
title	Golgi Alpha-Mannosidase II In Complex With 5-Substituted Swa Analog:(5s)-5-[2'-Oxo-2'-(4-Tert-Butylphenyl)Ethyl]-Swainso
authors	D.A.Kuntz, K.Shea, D.R.Rose
compound		source
Molecule: Alpha-Mannosidase 2 Chain: A Fragment: Catalytic Domain; Unp Residues 76-1108 Synonym: Alpha-Mannosidase II, Aman II, Man II, Mannosyl- Oligosaccharide 1,3-1,6-Alpha-Mannosidase, Golgi Alpha-Mann II; Ec: 3.2.1.114 Engineered: Yes		Organism_scientific: Drosophila Melanogaster Organism_common: Fruit Fly Organism_taxid: 7227 Gene: Alpha-Man-II, Gmii Expression_system: Drosophila Melanogaster Expression_system_common: Fruit Fly Expression_system_taxid: 7227 Expression_system_strain: S2 Cells Expression_system_vector_type: Stable Transfection Plasmid Expression_system_plasmid: Pmtbip_nhis
symmetry	Space Group: P 21 21 21	R_factor 0.155 R_Free 0.171
crystal cell	length a length b length c angle alpha angle beta angle gamma 69.372 110.543 139.985 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.32 Å
ligand	HN7, MRD, NAG, ZN	enzyme	Hydrolase E.C.3.2.1.114 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Structural Investigation of the Binding of 5-Substituted Swainsonine Analogues to Golgi alpha-Mannosidase II., Kuntz DA, Nakayama S, Shea K, Hori H, Uto Y, Nagasawa H, Rose DR, Chembiochem. 2010 Mar 5;11(5):673-680. PMID:20209559

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (375 Kb) [Save to disk] Biological Unit Coordinates (3eju.pdb1.gz) 369 Kb LPC: Ligand-Protein Contacts for 3EJU CSU: Contacts of Structural Units for 3EJU Structure Factors (3463 Kb) Retrieve 3EJU in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3EJU from S2C, [Save to disk] Re-refined 3eju structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3EJU in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3EJU

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3EJU, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3eju_A] [3eju] SWISS-PROT database: [Q24451] Domain organization of [MAN2_DROME] by SWISSPFAM Domain found in 3EJU: [Alpha-mann_mid ] by SMART

Other resources with information on 3EJU

Community annotation for 3EJU at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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