3ELA Hydrolase Hydrolase Inhibitor date Sep 21, 2008
title Crystal Structure Of Active Site Inhibited Coagulation Facto Mutant In Complex With Soluble Tissue Factor
authors J.R.Bjelke, M.Fodje, L.A.Svensson
compound source
Molecule: Coagulation Factor Viia Light Chain
Chain: L
Fragment: Unp Residues 61-212
Ec: 3.4.21.21
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: F7
Expression_system: Cricetulus Griseus
Expression_system_common: Chinese Hamster
Expression_system_taxid: 10029
Expression_system_cell: Cho-K1
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pee-Acedelta36nj

Molecule: Coagulation Factor Viia Heavy Chain
Chain: H
Fragment: Unp Residues 213-466
Ec: 3.4.21.21
Engineered: Yes
Mutation: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: F7
Expression_system: Cricetulus Griseus
Expression_system_common: Chinese Hamster
Expression_system_taxid: 10029
Expression_system_cell: Cho-K1
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pee-Acedelta36nj

Molecule: Tissue Factor
Chain: T
Fragment: Unp Residues 33-241
Synonym: Tf, Coagulation Factor III, Thromboplastin
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: F3
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet_tf1-209
symmetry Space Group: P 1 21 1
R_factor 0.233 R_Free 0.294
crystal
cell
length a length b length c angle alpha angle beta angle gamma
78.361 68.558 78.817 90.00 90.22 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand 0Z6, CA, FUC, GLC enzyme Hydrolase E.C.3.4.21.21 BRENDA
Primary referenceMechanism of the Ca2+-induced enhancement of the intrinsic factor VIIa activity., Bjelke JR, Olsen OH, Fodje M, Svensson LA, Bang S, Bolt G, Kragelund BB, Persson E, J Biol Chem. 2008 Sep 19;283(38):25863-70. Epub 2008 Jul 17. PMID:18640965
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (98 Kb) [Save to disk]
  • Biological Unit Coordinates (3ela.pdb1.gz) 90 Kb
  • LPC: Ligand-Protein Contacts for 3ELA
  • CSU: Contacts of Structural Units for 3ELA
  • Likely Quarternary Molecular Structure file(s) for 3ELA
  • Structure Factors (282 Kb)
  • Retrieve 3ELA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3ELA from S2C, [Save to disk]
  • Re-refined 3ela structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3ELA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3ELA
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3ELA, from MSDmotif at EBI
  • Fold representative 3ela from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ela_L] [3ela] [3ela_H] [3ela_T]
  • SWISS-PROT database: [P08709] [P13726]
  • Domain organization of [FA7_HUMAN] [TF_HUMAN] by SWISSPFAM
  • Domains found in 3ELA: [EGF] [EGF_CA] [GLA] [Tryp_SPc ] by SMART
  • Other resources with information on 3ELA
  • Community annotation for 3ELA at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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