3ELJ Transferase date Sep 22, 2008
title Jnk1 Complexed With A Bis-Anilino-Pyrrolopyrimidine Inhibito
authors S.Chamberlain, C.Atkins, F.Deanda, M.Dumble, R.Gerding, A.Groy, S.Korenchuk, R.Kumar, H.Lei, R.Mook, G.Moorthy, A.Redman, J.Rowla L.Shewchuk, G.Vicentini, J.Mosley
compound source
Molecule: Mitogen-Activated Protein Kinase 8
Chain: A
Synonym: Stress-Activated Protein Kinase Jnk1, C-Jun N-Term Kinase 1, Jnk-46;
Ec: 2.7.11.24
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mapk8, Jnk1, Prkm8
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 De3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex 6p1
symmetry Space Group: P 21 21 21
R_factor 0.187 R_Free 0.215
crystal
cell
length a length b length c angle alpha angle beta angle gamma
50.745 71.465 108.692 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand GS7 enzyme Transferase E.C.2.7.11.24 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceOptimization of 4,6-bis-anilino-1H-pyrrolo[2,3-d]pyrimidine IGF-1R tyrosine kinase inhibitors towards JNK selectivity., Chamberlain SD, Redman AM, Wilson JW, Deanda F, Shotwell JB, Gerding R, Lei H, Yang B, Stevens KL, Hassell AM, Shewchuk LM, Leesnitzer MA, Smith JL, Sabbatini P, Atkins C, Groy A, Rowand JL, Kumar R, Mook RA Jr, Moorthy G, Patnaik S, Bioorg Med Chem Lett. 2009 Jan 15;19(2):360-4. Epub 2008 Nov 24. PMID:19071018
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (71 Kb) [Save to disk]
  • Biological Unit Coordinates (3elj.pdb1.gz) 67 Kb
  • LPC: Ligand-Protein Contacts for 3ELJ
  • CSU: Contacts of Structural Units for 3ELJ
  • Likely Quarternary Molecular Structure file(s) for 3ELJ
  • Structure Factors (543 Kb)
  • Retrieve 3ELJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3ELJ from S2C, [Save to disk]
  • Re-refined 3elj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3ELJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3ELJ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3ELJ, from MSDmotif at EBI
  • Fold representative 3elj from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3elj_A] [3elj]
  • SWISS-PROT database: [P45983]
  • Domain organization of [MK08_HUMAN] by SWISSPFAM
  • Domain found in 3ELJ: [S_TKc ] by SMART
  • Other resources with information on 3ELJ
  • Community annotation for 3ELJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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