3EO0 Immune System date Sep 26, 2008
title Structure Of The Transforming Growth Factor-Beta Neutralizin Gc-1008
authors C.Gruetter, M.G.Gruetter
compound source
Molecule: Gc-1008 Fab Light Chain
Chain: A, C
Engineered: Yes
 Organism_scientific: Mus Musculus
Organism_taxid: 10090
Expression_system: Mus Musculus
Expression_system_taxid: 10090
Expression_system_strain: Ns0

Molecule: Gc-1008 Fab Heavy Chain
Chain: B, D
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_taxid: 10090
Expression_system: Mus Musculus
Expression_system_taxid: 10090
Expression_system_strain: Ns0
symmetry Space Group: P 1 21 1
R_factor 0.182 R_Free 0.201
crystal
cell
length a length b length c angle alpha angle beta angle gamma
91.561 83.009 91.824 90.00 103.38 90.00
method X-Ray Diffractionresolution 1.75 Å
ligand GOL enzyme
Primary referenceA cytokine-neutralizing antibody as a structural mimetic of 2 receptor interactions., Grutter C, Wilkinson T, Turner R, Podichetty S, Finch D, McCourt M, Loning S, Jermutus L, Grutter MG, Proc Natl Acad Sci U S A. 2008 Dec 23;105(51):20251-6. Epub 2008 Dec 10. PMID:19073914
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (153 Kb) [Save to disk]
  • Biological Unit Coordinates (3eo0.pdb1.gz) 75 Kb
  • Biological Unit Coordinates (3eo0.pdb2.gz) 76 Kb
  • LPC: Ligand-Protein Contacts for 3EO0
  • CSU: Contacts of Structural Units for 3EO0
  • Likely Quarternary Molecular Structure file(s) for 3EO0
  • Structure Factors (950 Kb)
  • Retrieve 3EO0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3EO0 from S2C, [Save to disk]
  • Re-refined 3eo0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3EO0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3EO0
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3EO0, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3eo0_A] [3eo0_] [3eo0_D] [3eo0] [3eo0_B] [3eo0_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 3EO0: [IG_like] [IGv ] by SMART
    • Other resources with information on 3EO0
  • Community annotation for 3EO0 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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