3EO2 Splicing date Sep 26, 2008
title Crystal Structure Of The Rhogef Domain Of Human Neuroepithel Transforming Gene 1 Protein
authors L.Nedyalkova, Y.Tong, W.Tempel, F.Mackenzie, C.H.Arrowsmith, A.M. C.Bountra, J.Weigelt, A.Bochkarev, H.Park, Structural Genomics Consortium (Sgc)
compound source
Molecule: Neuroepithelial Cell-Transforming Gene 1 Protein
Chain: A
Fragment: Unp Residues 161-373
Synonym: P65 Net1 Proto-Oncogene, Rho Guanine Nucleotide Ex Factor 8;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Net1, Arhgef8
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)-V2r-Prare2
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28-Mhl
symmetry Space Group: P 64
R_factor 0.213 R_Free 0.250
crystal
cell
length a length b length c angle alpha angle beta angle gamma
95.629 95.629 62.887 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.60 Å
ligand UNX enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (35 Kb) [Save to disk]
  • Biological Unit Coordinates (3eo2.pdb1.gz) 57 Kb
  • LPC: Ligand-Protein Contacts for 3EO2
  • CSU: Contacts of Structural Units for 3EO2
  • Likely Quarternary Molecular Structure file(s) for 3EO2
  • Structure Factors (114 Kb)
  • Retrieve 3EO2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3EO2 from S2C, [Save to disk]
  • Re-refined 3eo2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3EO2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3EO2
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3EO2, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3eo2_A] [3eo2]
  • SWISS-PROT database: [Q7Z628]
  • Domain organization of [ARHG8_HUMAN] by SWISSPFAM
  • Domain found in 3EO2: [RhoGEF ] by SMART
  • Other resources with information on 3EO2
  • Community annotation for 3EO2 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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