3EO3 Isomerase, Transferase date Sep 26, 2008
title Crystal Structure Of The N-Acetylmannosamine Kinase Domain O Gne Protein
authors L.Nedyalkova, Y.Tong, W.M.Rabeh, B.Hong, W.Tempel, F.Mackenzie, C.H.Arrowsmith, A.M.Edwards, C.Bountra, J.Weigelt, A.Bochkarev, Structural Genomics Consortium (Sgc)
compound source
Molecule: Bifunctional Udp-N-Acetylglucosamine 2-Epimerase Acetylmannosamine Kinase;
Chain: A, B, C
Fragment: Unp Residues 406-722
Synonym: Udp-Glcnac-2-Epimerasemanac Kinase, Udp-N-Acetylg 2-Epimerase, Uridine Diphosphate-N-Acetylglucosamine-2-Epim Udp-Glcnac-2-Epimerase, N-Acetylmannosamine Kinase, Manac K
Ec: 5.1.3.14, 2.7.1.60
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gne, Glcne
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21-Codonplus(De3)-Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28-Mhl
symmetry Space Group: P 31 2 1
R_factor 0.205 R_Free 0.245
crystal
cell
length a length b length c angle alpha angle beta angle gamma
127.946 127.946 127.247 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.84 Å
ligand UNX, ZN enzyme Isomerase E.C.5.1.3.14 BRENDA
Primary referenceCrystal structure of the N-acetylmannosamine kinase domain of GNE., Tong Y, Tempel W, Nedyalkova L, Mackenzie F, Park HW, PLoS One. 2009 Oct 20;4(10):e7165. PMID:19841673
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (123 Kb) [Save to disk]
  • Biological Unit Coordinates (3eo3.pdb1.gz) 78 Kb
  • Biological Unit Coordinates (3eo3.pdb2.gz) 78 Kb
  • Biological Unit Coordinates (3eo3.pdb3.gz) 78 Kb
  • LPC: Ligand-Protein Contacts for 3EO3
  • CSU: Contacts of Structural Units for 3EO3
  • Likely Quarternary Molecular Structure file(s) for 3EO3
  • Structure Factors (756 Kb)
  • Retrieve 3EO3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3EO3 from S2C, [Save to disk]
  • Re-refined 3eo3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3EO3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3EO3
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3EO3, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3eo3_C] [3eo3_B] [3eo3_A] [3eo3]
  • SWISS-PROT database: [Q9Y223]
  • Domain organization of [GLCNE_HUMAN] by SWISSPFAM
  • Other resources with information on 3EO3
  • Community annotation for 3EO3 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science