3EOY	Viral Protein Cell Adhesion	date	Sep 29, 2008
title	Structure Of Reovirus Sigma1 In Complex With Its Receptor Ju Adhesion Molecule-A
authors	E.Kirchner, K.M.Guglielmi, T.S.Dermody, T.Stehle
compound		source
Molecule: Outer Capsid Protein Sigma-1 Chain: A, B, C, D, E, F Fragment: Head Domain Synonym: Sigma1, Hemagglutinin, Cell Attachment Protein Engineered: Yes		Organism_scientific: Reovirus Organism_taxid: 10886 Strain: Type 3strain Dearing Gene: S1 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3) Plyss Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgex-4t-3
Molecule: Junctional Adhesion Molecule A Chain: G, H, I, J, K, L Fragment: D1 Domain Synonym: Jam-A, Junctional Adhesion Molecule 1, Jam-1, Plat Adhesion Molecule 1, Pam-1, Platelet F11 Receptor; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3) Plyss Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgex-4t-3
symmetry	Space Group: P 21 21 2	R_factor 0.210 R_Free 0.252
crystal cell	length a length b length c angle alpha angle beta angle gamma 105.940 124.340 130.659 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	3.40 Å
note	3EOY is a representative structure
Gene Ontology	Chain Function Process Component F, A, E, B, C, D J, K, H, I, G, L
Primary reference	Structure of reovirus sigma1 in complex with its receptor junctional adhesion molecule-A., Kirchner E, Guglielmi KM, Strauss HM, Dermody TS, Stehle T, PLoS Pathog. 2008 Dec;4(12):e1000235. Epub 2008 Dec 12. PMID:19079583

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (252 Kb) [Save to disk] Biological Unit Coordinates (3eoy.pdb1.gz) 125 Kb Biological Unit Coordinates (3eoy.pdb2.gz) 125 Kb CSU: Contacts of Structural Units for 3EOY Likely Quarternary Molecular Structure file(s) for 3EOY Structure Factors (392 Kb) Retrieve 3EOY in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3EOY from S2C, [Save to disk] Re-refined 3eoy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3EOY in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3EOY

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3EOY, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3eoy_D] [3eoy] [3eoy_B] [3eoy_L] [3eoy_A] [3eoy_J] [3eoy_F] [3eoy_E] [3eoy_I] [3eoy_K] [3eoy_H] [3eoy_C] [3eoy_G] SWISS-PROT database: [Q9Y624] [P03528] Domain organization of [JAM1_HUMAN] [SIGM1_REOVD] by SWISSPFAM Domain found in 3EOY: [IGv ] by SMART

Other resources with information on 3EOY

Community annotation for 3EOY at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

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