3EPP Transferase date Sep 29, 2008
title Crystal Structure Of Mrna Cap Guanine-N7 Methyltransferase ( Complex With Sinefungin
authors M.F.Amaya, H.Zeng, P.Loppnau, C.Bountra, J.Weigelt, C.H.Arrowsmit A.M.Edwards, A.Botchkarev, J.Min, A.N.Plotnikov, H.Wu, Structura Genomics Consortium (Sgc)
compound source
Molecule: Mrna Cap Guanine-N7 Methyltransferase
Chain: A, B
Fragment: Residues 165-476
Synonym: Mrna (Guanine-N(7)-)-Methyltransferase, Rg7mt1, Mr Methyltransferase, Hcm1p, Hcmt1, Hmet;
Ec: 2.1.1.56
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606
Gene: Rnmt, Kiaa0398
Expression_system: Escherichia Coli
Expression_system_strain: Dh5a
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b
symmetry Space Group: P 21 21 21
R_factor 0.228 R_Free 0.300
crystal
cell
length a length b length c angle alpha angle beta angle gamma
58.515 73.650 147.518 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.41 Å
ligand SFG enzyme Transferase E.C.2.1.1.56 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (93 Kb) [Save to disk]
  • Biological Unit Coordinates (3epp.pdb1.gz) 44 Kb
  • Biological Unit Coordinates (3epp.pdb2.gz) 44 Kb
  • LPC: Ligand-Protein Contacts for 3EPP
  • CSU: Contacts of Structural Units for 3EPP
  • Likely Quarternary Molecular Structure file(s) for 3EPP
  • Structure Factors (180 Kb)
  • Retrieve 3EPP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3EPP from S2C, [Save to disk]
  • Re-refined 3epp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3EPP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3EPP
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3EPP, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3epp_B] [3epp_A] [3epp]
  • SWISS-PROT database: [O43148]
  • Domain organization of [MCES_HUMAN] by SWISSPFAM
  • Other resources with information on 3EPP
  • Community annotation for 3EPP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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