3EPY Lipid Binding Protein date Sep 30, 2008
title Crystal Structure Of Human Acyl-Coa Binding Domain 7 Complex Palmitoyl-Coa
authors K.L.Kavanagh, E.Salah, W.W.Yue, P.Savitsky, J.W.Murray, C.H.Arrow J.Weigelt, A.M.Edwards, C.Bountra, F.Von Delft, U.Oppermann, Str Genomics Consortium (Sgc)
compound source
Molecule: Acyl-Coa-Binding Domain-Containing Protein 7
Chain: A, B
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Acbd7
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic28-Bsa4
symmetry Space Group: C 1 2 1
R_factor 0.203 R_Free 0.257
crystal
cell
length a length b length c angle alpha angle beta angle gamma
114.515 27.922 60.437 90.00 102.79 90.00
method X-Ray Diffractionresolution 2.01 Å
ligand COA, PLM enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (68 Kb) [Save to disk]
  • Biological Unit Coordinates (3epy.pdb1.gz) 121 Kb
  • Biological Unit Coordinates (3epy.pdb2.gz) 61 Kb
  • LPC: Ligand-Protein Contacts for 3EPY
  • CSU: Contacts of Structural Units for 3EPY
  • Likely Quarternary Molecular Structure file(s) for 3EPY
  • Structure Factors (622 Kb)
  • Retrieve 3EPY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3EPY from S2C, [Save to disk]
  • Re-refined 3epy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3EPY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3EPY
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3EPY, from MSDmotif at EBI
  • Fold representative 3epy from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3epy] [3epy_A] [3epy_B]
  • SWISS-PROT database: [Q8N6N7]
  • Domain organization of [ACBD7_HUMAN] by SWISSPFAM
  • Other resources with information on 3EPY
  • Community annotation for 3EPY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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