3ERY	Immune System	date	Oct 03, 2008
title	Different Thermodynamic Binding Mechanisms And Peptide Fine Specificities Associated With A Panel Of Structurally Simil Affinity T Cell Receptors
authors	R.H.Huang, L.L.Jones
compound		source
Molecule: H-2 Class I Histocompatibility Antigen Chain: A, B Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Plm-1
Molecule: 2-Oxoglutarate Dehydrogenase E1 Peptide Chain: P, Q Synonym: Alpha-Ketoglutarate Dehydrogenase Engineered: Yes		Synthetic: Yes Other_details: The Peptide Is Chemically Synthesized. It Is Naturally In Human.
symmetry	Space Group: P 1 21 1	R_factor 0.232 R_Free 0.283
crystal cell	length a length b length c angle alpha angle beta angle gamma 47.163 74.323 53.255 90.00 107.65 90.00
method	X-Ray Diffraction	resolution	1.95 Å
Primary reference	Different Thermodynamic Binding Mechanisms and Peptide Fine Specificities Associated with a Panel of Structurally Similar High-Affinity T Cell Receptors., Jones LL, Colf LA, Bankovich AJ, Stone JD, Gao YG, Chan CM, Huang RH, Garcia KC, Kranz DM, Biochemistry. 2008 Oct 31. PMID:18973345

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (62 Kb) [Save to disk] Biological Unit Coordinates (3ery.pdb1.gz) 32 Kb Biological Unit Coordinates (3ery.pdb2.gz) 28 Kb CSU: Contacts of Structural Units for 3ERY Likely Quarternary Molecular Structure file(s) for 3ERY Structure Factors (290 Kb) Retrieve 3ERY in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3ERY from S2C, [Save to disk] Re-refined 3ery structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3ERY in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3ERY

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3ERY, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3ery] [3ery_A] [3ery_B] [3ery_P] [3ery_Q] SWISS-PROT database: [Q02218] Domain organization of [ODO1_HUMAN] by SWISSPFAM

Other resources with information on 3ERY

Community annotation for 3ERY at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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