3ES3 Oxidoreductase date Oct 03, 2008
title Directing Noble Metal Ion Chemistry Within A Designed Ferrit Protein. The Complex With Gold Ions. Ferritin H8-H9x Mutant
authors L.Di Costanzo, D.W.Christianson
compound source
Molecule: Ferritin Heavy Chain
Chain: A
Synonym: Ferritin H Subunit, Cell Proliferation-Inducing Ge Protein;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fth1, Fth, Fthl6, Oksw-Cl.84, Pig15
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: F 4 3 2
R_factor 0.222 R_Free 0.275
length a length b length c angle alpha angle beta angle gamma
181.564 181.564 181.564 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.80 Å
ligand AU, CA enzyme Oxidoreductase E.C. BRENDA

Primary referenceDirecting noble metal ion chemistry within a designed ferritin protein., Butts CA, Swift J, Kang SG, Di Costanzo L, Christianson DW, Saven JG, Dmochowski IJ, Biochemistry. 2008 Dec 2;47(48):12729-39. PMID:18991401
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (36 Kb) [Save to disk]
  • Biological Unit Coordinates (3es3.pdb1.gz) 690 Kb
  • LPC: Ligand-Protein Contacts for 3ES3
  • CSU: Contacts of Structural Units for 3ES3
  • Likely Quarternary Molecular Structure file(s) for 3ES3
  • Structure Factors (57 Kb)
  • Retrieve 3ES3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3ES3 from S2C, [Save to disk]
  • Re-refined 3es3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3ES3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3ES3
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3ES3, from MSDmotif at EBI
  • Fold representative 3es3 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3es3] [3es3_A]
  • SWISS-PROT database: [P02794]
  • Domain organization of [FRIH_HUMAN] by SWISSPFAM
  • Other resources with information on 3ES3
  • Community annotation for 3ES3 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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