3ET7	Signaling Protein, Transferase	date	Oct 07, 2008
title	Crystal Structure Of Pyk2 Complexed With Pf-2318841
authors	S.Han
compound		source
Molecule: Protein Tyrosine Kinase 2 Beta Chain: A Synonym: Proline-Rich Tyrosine Kinase 2, Focal Adhesion Kin Fadk 2, Proline-Rich Tyrosine Kinase 2, Cell Adhesion Kinas Cak Beta, Calcium-Dependent Tyrosine Kinase, Cadtk, Related Focal Tyrosine Kinase, Raftk; Ec: 2.7.10.2 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ptk2b, Fak2, Pyk2, Raftk Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid
symmetry	Space Group: P 4 21 2	R_factor 0.247 R_Free 0.328
crystal cell	length a length b length c angle alpha angle beta angle gamma 106.824 106.824 75.185 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.70 Å
ligand	349, PO4	enzyme	Transferase E.C.2.7.10.2 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Trifluoromethylpyrimidine-based inhibitors of proline-rich tyrosine kinase 2 (PYK2): structure-activity relationships and strategies for the elimination of reactive metabolite formation., Walker DP, Bi FC, Kalgutkar AS, Bauman JN, Zhao SX, Soglia JR, Aspnes GE, Kung DW, Klug-McLeod J, Zawistoski MP, McGlynn MA, Oliver R, Dunn M, Li JC, Richter DT, Cooper BA, Kath JC, Hulford CA, Autry CL, Luzzio MJ, Ung EJ, Roberts WG, Bonnette PC, Buckbinder L, Mistry A, Griffor MC, Han S, Guzman-Perez A, Bioorg Med Chem Lett. 2008 Dec 1;18(23):6071-7. Epub 2008 Oct 11. PMID:18951788

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (50 Kb) [Save to disk] Biological Unit Coordinates (3et7.pdb1.gz) 45 Kb LPC: Ligand-Protein Contacts for 3ET7 CSU: Contacts of Structural Units for 3ET7 Likely Quarternary Molecular Structure file(s) for 3ET7 Structure Factors (200 Kb) Retrieve 3ET7 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3ET7 from S2C, [Save to disk] Re-refined 3et7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3ET7 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3ET7

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3ET7, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3et7] [3et7_A] SWISS-PROT database: [Q14289] Domain organization of [FAK2_HUMAN] by SWISSPFAM Domain found in 3ET7: [TyrKc ] by SMART

Other resources with information on 3ET7

Community annotation for 3ET7 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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