3ET7 Signaling Protein, Transferase date Oct 07, 2008
title Crystal Structure Of Pyk2 Complexed With Pf-2318841
authors S.Han
compound source
Molecule: Protein Tyrosine Kinase 2 Beta
Chain: A
Synonym: Proline-Rich Tyrosine Kinase 2, Focal Adhesion Kinase 2, Fadk 2, Proline-Rich Tyrosine Kinase 2, Cell Adhesion Kinase Beta, Cak Beta, Calcium-Dependent Tyrosine Kinase, Cadtk, Related Adhesion Focal Tyrosine Kinase, Raftk;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ptk2b, Fak2, Pyk2, Raftk
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
symmetry Space Group: P 4 21 2
R_factor 0.247 R_Free 0.328
length a length b length c angle alpha angle beta angle gamma
106.824 106.824 75.185 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.70 Å
ligand 349, PO4 enzyme Transferase E.C. BRENDA

Primary referenceTrifluoromethylpyrimidine-based inhibitors of proline-rich tyrosine kinase 2 (PYK2): structure-activity relationships and strategies for the elimination of reactive metabolite formation., Walker DP, Bi FC, Kalgutkar AS, Bauman JN, Zhao SX, Soglia JR, Aspnes GE, Kung DW, Klug-McLeod J, Zawistoski MP, McGlynn MA, Oliver R, Dunn M, Li JC, Richter DT, Cooper BA, Kath JC, Hulford CA, Autry CL, Luzzio MJ, Ung EJ, Roberts WG, Bonnette PC, Buckbinder L, Mistry A, Griffor MC, Han S, Guzman-Perez A, Bioorg Med Chem Lett. 2008 Dec 1;18(23):6071-7. Epub 2008 Oct 11. PMID:18951788
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (51 Kb) [Save to disk]
  • Biological Unit Coordinates (3et7.pdb1.gz) 46 Kb
  • LPC: Ligand-Protein Contacts for 3ET7
  • CSU: Contacts of Structural Units for 3ET7
  • Likely Quarternary Molecular Structure file(s) for 3ET7
  • Structure Factors (200 Kb)
  • Retrieve 3ET7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3ET7 from S2C, [Save to disk]
  • Re-refined 3et7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3ET7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3ET7
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3ET7, from MSDmotif at EBI
  • Fold representative 3et7 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3et7] [3et7_A]
  • SWISS-PROT database: [Q14289]
  • Domain organization of [FAK2_HUMAN] by SWISSPFAM
  • Domain found in 3ET7: [TyrKc ] by SMART
  • Other resources with information on 3ET7
  • Community annotation for 3ET7 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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