3EU7 Transcription Antitumor Protein date Oct 09, 2008
title Crystal Structure Of A Palb2 Brca2 Complex
authors A.W.Oliver, L.H.Pearl
compound source
Molecule: Partner And Localizer Of Brca2
Chain: A
Fragment: C-Terminal Wd40 Domain, Residues 835-1186
Synonym: Palb2, Fanconi Anemia Group N Protein
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Palb2
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_strain: Sf9
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Ptwo-B

Molecule: 19meric Peptide From Breast Cancer Type 2 Suscept Protein;
Chain: X
Fragment: Interaction With Palb2, Residues 21-39
Synonym: Brca2, Fanconi Anemia Group D1 Protein
Engineered: Yes

Synthetic: Yes
Other_details: Chemically Synthesized; This Sequence Occurs Naturally In Humans
symmetry Space Group: C 1 2 1
R_factor 0.197 R_Free 0.253
crystal
cell
length a length b length c angle alpha angle beta angle gamma
82.815 62.026 77.975 90.00 108.23 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand CSW, GOL enzyme
Primary referenceStructural basis for recruitment of BRCA2 by PALB2., Oliver AW, Swift S, Lord CJ, Ashworth A, Pearl LH, EMBO Rep. 2009 Jul 17. PMID:19609323
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (59 Kb) [Save to disk]
  • Biological Unit Coordinates (3eu7.pdb1.gz) 54 Kb
  • LPC: Ligand-Protein Contacts for 3EU7
  • CSU: Contacts of Structural Units for 3EU7
  • Likely Quarternary Molecular Structure file(s) for 3EU7
  • Structure Factors (856 Kb)
  • Retrieve 3EU7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3EU7 from S2C, [Save to disk]
  • Re-refined 3eu7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3EU7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3EU7
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3EU7, from MSDmotif at EBI
  • Fold representative 3eu7 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3eu7_X] [3eu7] [3eu7_A]
  • SWISS-PROT database: [P51587] [Q86YC2]
  • Domain organization of [BRCA2_HUMAN] [PALB2_HUMAN] by SWISSPFAM
  • Alignments of the sequence of 3EU7 with the sequences similar proteins can be viewed for 3EU7's classification [BRCA2_HUMAN] [PALB2_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [BRCA2_HUMAN] [PALB2_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 3EU7
  • Community annotation for 3EU7 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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