3EVR Signaling Protein date Oct 13, 2008
title Crystal Structure Of Calcium Bound Monomeric Gcamp2
authors Q.Wang, B.Shui, M.I.Kotlikoff, H.Sondermann
compound source
Molecule: Myosin Light Chain Kinase, Green Fluorescent Prot Calmodulin-1 Chimera;
Chain: A
Fragment: Unp P42212 Residues 2-238, Unp P0dp29 Residues 14
Engineered: Yes
Organism_scientific: Aequorea Victoria, Rattus Norvegicus
Organism_common: Jellyfish, Rat
Organism_taxid: 6100, 10116
Gene: Gfp, Calm1, Calm, Cam, Cam1, Cami
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21
symmetry Space Group: P 41 21 2
R_factor 0.163 R_Free 0.190
crystal
cell
length a length b length c angle alpha angle beta angle gamma
121.995 121.995 97.831 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand CA, CRO enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural Basis for Calcium Sensing by GCaMP2., Wang Q, Shui B, Kotlikoff MI, Sondermann H, Structure. 2008 Dec 12;16(12):1817-27. PMID:19081058
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (147 Kb) [Save to disk]
  • Biological Unit Coordinates (3evr.pdb1.gz) 140 Kb
  • LPC: Ligand-Protein Contacts for 3EVR
  • CSU: Contacts of Structural Units for 3EVR
  • Likely Quarternary Molecular Structure file(s) for 3EVR
  • Structure Factors (395 Kb)
  • Retrieve 3EVR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3EVR from S2C, [Save to disk]
  • Re-refined 3evr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3EVR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3EVR
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3EVR, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3evr] [3evr_A]
  • SWISS-PROT database: [P62161] [P42212]
  • Domain organization of [CALM_RAT] [GFP_AEQVI] by SWISSPFAM
  • Domain found in 3EVR: [EFh ] by SMART
  • Other resources with information on 3EVR
  • Community annotation for 3EVR at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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