3EWJ Hydrolase date Oct 15, 2008
title Crystal Structure Of Catalytic Domain Of Tace With Carboxyla Inhibitor
authors P.Orth
compound source
Molecule: Adam 17
Chain: A, B
Fragment: Catalytic Domain, Unp Residues 215-477
Synonym: A Disintegrin And Metalloproteinase Domain 17, Tnf Converting Enzyme, Tnf-Alpha Convertase, Snake Venom-Like P
Ec: 3.4.24.86
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Adam17, Csvp, Tace
Expression_system: Trichoplusia Ni
Expression_system_taxid: 7111
symmetry Space Group: P 21 21 21
R_factor 0.181 R_Free 0.210
crystal
cell
length a length b length c angle alpha angle beta angle gamma
72.398 76.176 103.565 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand 642, INN, ZN BindingDB enzyme Hydrolase E.C.3.4.24.86 BRENDA
Primary referenceDiscovery of novel spirocyclopropyl hydroxamate and carboxylate compounds as TACE inhibitors., Guo Z, Orth P, Wong SC, Lavey BJ, Shih NY, Niu X, Lundell DJ, Madison V, Kozlowski JA, Bioorg Med Chem Lett. 2009 Jan 1;19(1):54-7. Epub 2008 Nov 14. PMID:19054672
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (97 Kb) [Save to disk]
  • Biological Unit Coordinates (3ewj.pdb1.gz) 47 Kb
  • Biological Unit Coordinates (3ewj.pdb2.gz) 48 Kb
  • LPC: Ligand-Protein Contacts for 3EWJ
  • CSU: Contacts of Structural Units for 3EWJ
  • Likely Quarternary Molecular Structure file(s) for 3EWJ
  • Structure Factors (861 Kb)
  • Retrieve 3EWJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3EWJ from S2C, [Save to disk]
  • Re-refined 3ewj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3EWJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3EWJ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3EWJ, from MSDmotif at EBI
  • Fold representative 3ewj from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ewj] [3ewj_A] [3ewj_B]
  • SWISS-PROT database: [P78536]
  • Domain organization of [ADA17_HUMAN] by SWISSPFAM
  • Other resources with information on 3EWJ
  • Community annotation for 3EWJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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