3EWV Calcium Binding Protein date Oct 16, 2008
title Crystal Structure Of Calmodulin Complexed With A Peptide
authors T.Jiang, P.Cao, Y.Gong, H.J.Yu, W.J.Gui, W.T.Zhang
compound source
Molecule: Calmodulin
Chain: A
Synonym: Cam
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a

Molecule: Tumor Necrosis Factor Receptor Superfamily Member
Chain: E
Fragment: Helix5 Of Death Domain
Synonym: Low-Affinity Nerve Growth Factor Receptor, Ngf Rec Gp80-Lngfr, P75 Icd, Low Affinity Neurotrophin Receptor P75 Antigen;
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
Other_details: This Sequence Occurs Naturally In Humans.
symmetry Space Group: P 32 2 1
R_factor 0.228 R_Free 0.282
crystal
cell
length a length b length c angle alpha angle beta angle gamma
39.936 39.936 181.993 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.60 Å
ligand CA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (33 Kb) [Save to disk]
  • Biological Unit Coordinates (3ewv.pdb1.gz) 28 Kb
  • LPC: Ligand-Protein Contacts for 3EWV
  • CSU: Contacts of Structural Units for 3EWV
  • Structure Factors (73 Kb)
  • Retrieve 3EWV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3EWV from S2C, [Save to disk]
  • Re-refined 3ewv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3EWV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3EWV
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3EWV, from MSDmotif at EBI
  • Fold representative 3ewv from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ewv_A] [3ewv] [3ewv_E]
  • SWISS-PROT database: [P62158] [P08138]
  • Belongs to the calmodulin calcium binding protein (calmodulin) family according to TCDB.
  • Domain organization of [CALM_HUMAN] [TNR16_HUMAN] by SWISSPFAM
  • Domain found in 3EWV: [EFh ] by SMART
  • Other resources with information on 3EWV
  • Community annotation for 3EWV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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