3EYQ Crystal structure of MJ5 Fab, a germline antibody variant of anti-human cytomegalovirus antibody 8f9 date
authors Thomson, C.A., Bryson, S., McLean, G.R., Creagh, A.L., Pai, E.F., Schrader, J.W.
compound source
symmetry
R_factor
R_Free 0.27
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.40
Gene
Ontology
ChainFunctionProcessComponent
C


Primary referenceGermline V-genes sculpt the binding site of a family of antibodies neutralizing human cytomegalovirus., Thomson CA, Bryson S, McLean GR, Creagh AL, Pai EF, Schrader JW, EMBO J. 2008 Oct 8;27(19):2592-602. Epub 2008 Sep 4. PMID:18772881
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (75 Kb) [Save to disk]
  • Biological Unit Coordinates (3eyq.pdb1.gz) 68 Kb
  • CSU: Contacts of Structural Units for 3EYQ
  • Likely Quarternary Molecular Structure file(s) for 3EYQ
  • Structure Factors (253 Kb)
  • Retrieve 3EYQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3EYQ from S2C, [Save to disk]
  • Re-refined 3eyq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3EYQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3EYQ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3EYQ, from MSDmotif at EBI
  • Fold representative 3eyq from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3eyq] [3eyq_D] [3eyq_C]
  • SWISS-PROT database: [P01857] [P01834] [P04433]
  • Domain organization of [IGHG1_HUMAN] [IGKC_HUMAN] [KV309_HUMAN] by SWISSPFAM
  • Domains found in 3EYQ: [IG_like] [IGv ] by SMART
  • Other resources with information on 3EYQ
  • Community annotation for 3EYQ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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