3EZQ Apoptosis date Oct 23, 2008
title Crystal Structure Of The Fasfadd Death Domain Complex
authors R.Schwarzenbacher, H.Robinson, B.Stec, S.J.Riedl
compound source
Molecule: Tumor Necrosis Factor Receptor Superfamily Member
Chain: A, C, E, G, I, K, M, O
Fragment: Fas Dd, Unp Residues 223-335
Synonym: Faslg Receptor, Apoptosis-Mediating Surface Antige Apo-1 Antigen, Cd95 Antigen;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fas, Apt1, Fas1, Tnfrsf6
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15

Molecule: Protein Fadd
Chain: B, D, F, H, J, L, N, P
Fragment: Fadd Dd, Unp Residues 93-208
Synonym: Fas-Associated Death Domain Protein, Fas-Associati Domain-Containing Protein, Mediator Of Receptor Induced Tox
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fadd, Mort1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15
symmetry Space Group: P 61
R_factor 0.234 R_Free 0.278
crystal
cell
length a length b length c angle alpha angle beta angle gamma
126.218 126.218 299.274 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.73 Å
ligand NA, SO4 enzyme
note 3EZQ is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
F, N, L, J, P, B, H, D


K, E, M, C, A, O, I, G


Primary referenceThe Fas-FADD death domain complex structure unravels signalling by receptor clustering., Scott FL, Stec B, Pop C, Dobaczewska MK, Lee JJ, Monosov E, Robinson H, Salvesen GS, Schwarzenbacher R, Riedl SJ, Nature. 2009 Feb 19;457(7232):1019-22. Epub 2008 Dec 31. PMID:19118384
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (290 Kb) [Save to disk]
  • Biological Unit Coordinates (3ezq.pdb1.gz) 71 Kb
  • Biological Unit Coordinates (3ezq.pdb2.gz) 71 Kb
  • Biological Unit Coordinates (3ezq.pdb3.gz) 73 Kb
  • Biological Unit Coordinates (3ezq.pdb4.gz) 71 Kb
  • LPC: Ligand-Protein Contacts for 3EZQ
  • CSU: Contacts of Structural Units for 3EZQ
  • Likely Quarternary Molecular Structure file(s) for 3EZQ
  • Structure Factors (1075 Kb)
  • Retrieve 3EZQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3EZQ from S2C, [Save to disk]
  • Re-refined 3ezq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3EZQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3EZQ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3EZQ, from MSDmotif at EBI
  • Fold representative 3ezq from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ezq_I] [3ezq_H] [3ezq_F] [3ezq_N] [3ezq_C] [3ezq_O] [3ezq_L] [3ezq_M] [3ezq] [3ezq_A] [3ezq_J] [3ezq_K] [3ezq_E] [3ezq_G] [3ezq_D] [3ezq_P] [3ezq_B]
  • SWISS-PROT database: [Q13158] [P25445]
  • Domain organization of [FADD_HUMAN] [TNR6_HUMAN] by SWISSPFAM
  • Domain found in 3EZQ: [DEATH ] by SMART
  • Other resources with information on 3EZQ
  • Community annotation for 3EZQ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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