3F1K Oxidoreductase date Oct 28, 2008
title Crystal Structure Of Ycik From E. Coli, An Oxidoreductase, C With Nadp+ At 2.6a Resolution
authors J.Vijayalakshmi, R.W.Woodard
compound source
Molecule: Uncharacterized Oxidoreductase Ycik
Chain: A
Ec: 1.-.-.-
Engineered: Yes
 Organism_scientific: Escherichia Coli K12
Organism_taxid: 83333
Strain: K-12 Mg1655
Gene: B1271, Jw1263, Ycik
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pt7-7
symmetry Space Group: P 32 2 1
R_factor 0.211 R_Free 0.261
crystal
cell
length a length b length c angle alpha angle beta angle gamma
88.509 88.509 80.419 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.60 Å
ligand MSE, NAP enzyme Oxidoreductase E.C.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (47 Kb) [Save to disk]
  • Biological Unit Coordinates (3f1k.pdb1.gz) 82 Kb
  • LPC: Ligand-Protein Contacts for 3F1K
  • CSU: Contacts of Structural Units for 3F1K
  • Likely Quarternary Molecular Structure file(s) for 3F1K
  • Structure Factors (350 Kb)
  • Retrieve 3F1K in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3F1K from S2C, [Save to disk]
  • Re-refined 3f1k structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3F1K in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3F1K
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3F1K, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3f1k_A] [3f1k]
  • SWISS-PROT database: [P31808]
  • Domain organization of [YCIK_ECOLI] by SWISSPFAM
    • Other resources with information on 3F1K
  • Community annotation for 3F1K at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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