3F2A	Transferase	date	Oct 29, 2008
title	Crystal Structure Of Human Pim-1 In Complex With Dappa
authors	K.Qian
compound		source
Molecule: Proto-Oncogene Serinethreonine-Protein Kinase Pi Chain: A Fragment: Unp Residues 105-404 Synonym: Pim1 Protein Kinase Ec: 2.7.11.1 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Pim1 Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_strain: Sf9
symmetry	Space Group: P 65	R_factor 0.256 R_Free 0.282
crystal cell	length a length b length c angle alpha angle beta angle gamma 96.060 96.060 80.530 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	1.90 Å
ligand	985, MG, SEP BindingDB	enzyme	Transferase E.C.2.7.11.1 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Hit to Lead Account of the Discovery of a New Class of Inhibitors of Pim Kinases and Crystallographic Studies Revealing an Unusual Kinase Binding Mode (dagger)., Qian K, Wang L, Cywin CL, Farmer BT, Hickey E, Homon C, Jakes S, Kashem MA, Lee G, Leonard S, Li J, Magboo R, Mao W, Pack E, Peng C, Prokopowicz A, Welzel M, Wolak J, Morwick T, J Med Chem. 2009 Mar 3. PMID:19256503

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (54 Kb) [Save to disk] Biological Unit Coordinates (3f2a.pdb1.gz) 49 Kb LPC: Ligand-Protein Contacts for 3F2A CSU: Contacts of Structural Units for 3F2A Likely Quarternary Molecular Structure file(s) for 3F2A Structure Factors (446 Kb) Retrieve 3F2A in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3F2A from S2C, [Save to disk] Re-refined 3f2a structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3F2A in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3F2A

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3F2A, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3f2a_A] [3f2a] SWISS-PROT database: [P11309] Domain organization of [PIM1_HUMAN] by SWISSPFAM Domain found in 3F2A: [S_TKc ] by SMART

Other resources with information on 3F2A

Community annotation for 3F2A at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---