3F2O	Apoptosis Hydrolase	date	Oct 30, 2008
title	Crystal Structure Of Human Splaryanodine Receptor Domain An Containing 1 (Spsb1) In Complex With A 20-Residue Vasa Pept
authors	P.Filippakopoulos, T.Sharpe, T.Keates, J.W.Murray, P.Savitsky, A. A.C.W.Pike, F.Von Delft, C.H.Arrowsmith, A.M.Edwards, J.Weigelt C.Bountra, S.Knapp, A.Bullock, Structural Genomics Consortium
compound		source
Molecule: Spry Domain-Containing Socs Box Protein 1 Chain: A, B Fragment: Residues 1-233 Synonym: Ssb-1 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Spsb1, Ssb1 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3)-R3 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pnic28-Bsa4
Molecule: 20-Mer Peptide From Atp-Dependent Rna Helicase Va Chain: C, D Ec: 3.6.1.- Engineered: Yes		Synthetic: Yes Other_details: The Peptide Was Chemically Synthesized. The Of The Peptide Is Naturally Found In Drosophila Melanogaste Fly)
symmetry	Space Group: P 21 21 21	R_factor 0.180 R_Free 0.232
crystal cell	length a length b length c angle alpha angle beta angle gamma 75.665 80.654 86.864 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.05 Å
ligand		enzyme	Hydrolase E.C.3.6.1 BRENDA
Primary reference	Structural basis for Par-4 recognition by the SPRY domain- and SOCS box-containing proteins SPSB1, SPSB2, and SPSB4., Filippakopoulos P, Low A, Sharpe TD, Uppenberg J, Yao S, Kuang Z, Savitsky P, Lewis RS, Nicholson SE, Norton RS, Bullock AN, J Mol Biol. 2010 Aug 20;401(3):389-402. Epub 2010 Jun 16. PMID:20561531

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (82 Kb) [Save to disk] Biological Unit Coordinates (3f2o.pdb1.gz) 40 Kb Biological Unit Coordinates (3f2o.pdb2.gz) 37 Kb CSU: Contacts of Structural Units for 3F2O Likely Quarternary Molecular Structure file(s) for 3F2O Structure Factors (456 Kb) Retrieve 3F2O in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3F2O from S2C, [Save to disk] Re-refined 3f2o structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3F2O in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3F2O

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3F2O, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3f2o_A] [3f2o_B] [3f2o] [3f2o_C] [3f2o_D] SWISS-PROT database: [Q96BD6] [P09052] Domain organization of [SPSB1_HUMAN] [VASA_DROME] by SWISSPFAM Domain found in 3F2O: [SPRY ] by SMART

Other resources with information on 3F2O

Community annotation for 3F2O at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---