3F3S Structural Protein date Oct 31, 2008
title The Crystal Structure Of Human Lambda-Crystallin, Cryl1
authors E.Ugochukwu, C.Johansson, W.W.Yue, G.Kochan, E.Pilka, A.Kramm, A.C P.Filippakopoulos, F.Von Delft, C.Bountra, C.H.Arrowsmith, J.We A.Edwards, U.Oppermann, Structural Genomics Consortium (Sgc)
compound source
Molecule: Lambda-Crystallin Homolog
Chain: A, B
Fragment: Residues 6-316
Synonym: Cryl1
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cryl1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)-R3-Prare2
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic28-Bsa4
symmetry Space Group: P 65
R_factor 0.154 R_Free 0.196
crystal
cell
length a length b length c angle alpha angle beta angle gamma
102.085 102.085 134.986 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.00 Å
ligand CL, GOL, NAD, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (112 Kb) [Save to disk]
  • Biological Unit Coordinates (3f3s.pdb1.gz) 55 Kb
  • Biological Unit Coordinates (3f3s.pdb2.gz) 52 Kb
  • Biological Unit Coordinates (3f3s.pdb3.gz) 104 Kb
  • LPC: Ligand-Protein Contacts for 3F3S
  • CSU: Contacts of Structural Units for 3F3S
  • Likely Quarternary Molecular Structure file(s) for 3F3S
  • Structure Factors (724 Kb)
  • Retrieve 3F3S in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3F3S from S2C, [Save to disk]
  • Re-refined 3f3s structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3F3S in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3F3S
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3F3S, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3f3s] [3f3s_A] [3f3s_B]
  • SWISS-PROT database: [Q9Y2S2]
  • Domain organization of [CRYL1_HUMAN] by SWISSPFAM
    • Other resources with information on 3F3S
  • Community annotation for 3F3S at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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