3F5G	Transferase	date	Nov 03, 2008
title	Crystal Structure Of Death Associated Protein Kinase In Complex With Adp And Mg2+
authors	L.K.Mcnamara, D.M.Watterson, J.S.Brunzelle
compound		source
Molecule: Death-Associated Protein Kinase 1 Chain: A Fragment: Unp Residues 2-285, Protein Kinase Domain, Catalytic Domain; Synonym: Dap Kinase 1 Ec: 2.7.11.1 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Dapk, Dapk1, Death-Associated Protein Kinase 1 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Top10 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pask-Iba3
symmetry	Space Group: P 21 21 21	R_factor 0.185 R_Free 0.244
crystal cell	length a length b length c angle alpha angle beta angle gamma 46.807 62.545 88.396 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.85 Å
ligand	ADP, MG	enzyme	Transferase E.C.2.7.11.1 BRENDA
Primary reference	Structural insight into nucleotide recognition by human death-associated protein kinase., McNamara LK, Watterson DM, Brunzelle JS, Acta Crystallogr D Biol Crystallogr. 2009 Mar;65(Pt 3):241-8. Epub 2009, Feb 20. PMID:19237746

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (58 Kb) [Save to disk] Biological Unit Coordinates (3f5g.pdb1.gz) 53 Kb LPC: Ligand-Protein Contacts for 3F5G CSU: Contacts of Structural Units for 3F5G Likely Quarternary Molecular Structure file(s) for 3F5G Structure Factors (328 Kb) Retrieve 3F5G in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3F5G from S2C, [Save to disk] Re-refined 3f5g structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3F5G in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz. On AstexViewer, from MSD-EBI (viewer documentation). On RasMol (Install RasMol freeware) Here's help on how to use RasMol.

Visual 3D analysis of 3F5G

Cartoon representation from PDB Cartoon Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute 3D motif for 3F5G, from MSDmotif at EBI Fold representative 3f5g from FSSP and Dali (Families of Structurally Similar Proteins)

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3f5g_A] SWISS-PROT database: [P53355] Domain organization of [DAPK1_HUMAN] by SWISSPFAM Domain found in 3F5G: [S_TKc ] by SMART Alignments of the sequence of 3F5G with the sequences similar proteins can be viewed for 3F5G's classification [DAPK1_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list. A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [DAPK1_HUMAN] at ProtoMap. Click on the Cluster number.

Other resources with information on 3F5G

Community annotation for 3F5G at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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