3F7R Cell Adhesion date Nov 10, 2008
title First Pair Of Fibronectin Type III Domains And Part Of The C Segment Of The Integrin Beta4
authors J.M.De Pereda
compound source
Molecule: Integrin Beta-4
Chain: A
Fragment: Fibronectin Type-III, Residues 1126-1370
Synonym: Gp150
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Itgb4
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Derivative Of Pet15b
symmetry Space Group: C 1 2 1
R_factor 0.176 R_Free 0.215
crystal
cell
length a length b length c angle alpha angle beta angle gamma
137.500 42.150 56.910 90.00 109.92 90.00
method X-Ray Diffractionresolution 2.04 Å
ligand CL, EDO, PEG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural basis of the interaction between integrin alpha6beta4 and plectin at the hemidesmosomes., de Pereda JM, Lillo MP, Sonnenberg A, EMBO J. 2009 Feb 26. PMID:19242489
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (109 Kb) [Save to disk]
  • Biological Unit Coordinates (3f7r.pdb1.gz) 104 Kb
  • LPC: Ligand-Protein Contacts for 3F7R
  • CSU: Contacts of Structural Units for 3F7R
  • Likely Quarternary Molecular Structure file(s) for 3F7R
  • Structure Factors (148 Kb)
  • Retrieve 3F7R in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3F7R from S2C, [Save to disk]
  • Re-refined 3f7r structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3F7R in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3F7R
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3F7R, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3f7r_A] [3f7r]
  • SWISS-PROT database: [P16144]
  • Domain organization of [ITB4_HUMAN] by SWISSPFAM
  • Domain found in 3F7R: [FN3 ] by SMART
  • Other resources with information on 3F7R
  • Community annotation for 3F7R at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science