3F9M Transferase date Nov 14, 2008
title Human Pancreatic Glucokinase In Complex With Glucose And Act Showing A Mobile Flap
authors P.Petit, L.Gluais, A.Lagarde, L.Vuillard, J.A.Boutin, G.Ferry
compound source
Molecule: Glucokinase
Chain: A
Fragment: Unp Residues 12-465
Synonym: Hexokinase Type Iv, Hk Iv, Hexokinase-4, Hk4, Hexo
Ec: 2.7.1.2
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
symmetry Space Group: P 21 21 21
R_factor 0.190 R_Free 0.222
crystal
cell
length a length b length c angle alpha angle beta angle gamma
65.700 81.200 85.600 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.50 Å
ligand GLC, MRK BindingDB enzyme Transferase E.C.2.7.1.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe active conformation of human glucokinase is not altered by allosteric activators., Petit P, Antoine M, Ferry G, Boutin JA, Lagarde A, Gluais L, Vincentelli R, Vuillard L, Acta Crystallogr D Biol Crystallogr. 2011 Nov;67(Pt 11):929-35. Epub 2011 Oct 19. PMID:22101819
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (87 Kb) [Save to disk]
  • Biological Unit Coordinates (3f9m.pdb1.gz) 82 Kb
  • LPC: Ligand-Protein Contacts for 3F9M
  • CSU: Contacts of Structural Units for 3F9M
  • Likely Quarternary Molecular Structure file(s) for 3F9M
  • Structure Factors (528 Kb)
  • Retrieve 3F9M in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3F9M from S2C, [Save to disk]
  • Re-refined 3f9m structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3F9M in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3F9M
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3F9M, from MSDmotif at EBI
  • Fold representative 3f9m from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3f9m] [3f9m_A]
  • SWISS-PROT database: [P35557]
  • Domain organization of [HXK4_HUMAN] by SWISSPFAM
  • Other resources with information on 3F9M
  • Community annotation for 3F9M at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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