3FBG Structural Genomics, Unknown Function date Nov 19, 2008
title Crystal Structure Of A Putative Arginate Lyase From Staphylo Haemolyticus
authors J.B.Bonanno, M.Gilmore, K.T.Bain, J.Do, R.Romero, S.Wasserman, J.M S.K.Burley, S.C.Almo, New York Sgx Research Center For Struct Genomics (Nysgxrc)
compound source
Molecule: Putative Arginate Lyase
Chain: A, B
Engineered: Yes
 Organism_scientific: Staphylococcus Haemolyticus
Organism_taxid: 279808
Strain: Jcsc1435
Gene: Sh0852
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Modified Pet26
symmetry Space Group: P 1 21 1
R_factor 0.235 R_Free 0.275
crystal
cell
length a length b length c angle alpha angle beta angle gamma
47.198 93.552 83.240 90.00 98.86 90.00
method X-Ray Diffractionresolution 1.60 Å
ligand MG enzyme
note 3FBG is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (120 Kb) [Save to disk]
  • Biological Unit Coordinates (3fbg.pdb1.gz) 114 Kb
  • LPC: Ligand-Protein Contacts for 3FBG
  • CSU: Contacts of Structural Units for 3FBG
  • Likely Quarternary Molecular Structure file(s) for 3FBG
  • Structure Factors (4121 Kb)
  • Retrieve 3FBG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3FBG from S2C, [Save to disk]
  • Re-refined 3fbg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3FBG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3FBG
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3FBG, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3fbg_B] [3fbg_A] [3fbg]
  • SWISS-PROT database: [Q4L864]
  • Domain organization of [Q4L864_STAHJ] by SWISSPFAM
    • Other resources with information on 3FBG
  • Community annotation for 3FBG at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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