3FCE Ligase date Nov 21, 2008
title Crystal Structure Of Bacillus Cereus D-Alanyl Carrier Protei Dlta In Complex With Atp: Implications For Adenylation Mech
authors K.T.Osman, L.Du, Y.He, Y.Luo
compound source
Molecule: D-Alanine--Poly(Phosphoribitol) Ligase Subunit 1
Chain: A
Synonym: D-Alanine-Activating Enzyme, Dae, D-Alanine-D-Alan Protein Ligase, Dcl;
Ec: 6.1.1.13
Engineered: Yes
Organism_scientific: Bacillus Cereus
Organism_taxid: 226900
Strain: Atcc 14579
Gene: Bc_1372, Dlta
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21-Rosetta2 (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a
symmetry Space Group: P 1 21 1
R_factor 0.207 R_Free 0.252
crystal
cell
length a length b length c angle alpha angle beta angle gamma
61.400 87.400 57.400 90.00 114.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand ATP, CA enzyme Ligase E.C.6.1.1.13 BRENDA
Gene BC
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal Structure of Bacillus cereusd-Alanyl Carrier Protein Ligase (DltA) in Complex with ATP., Osman KT, Du L, He Y, Luo Y, J Mol Biol. 2009 Mar 24. PMID:19324056
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (92 Kb) [Save to disk]
  • Biological Unit Coordinates (3fce.pdb1.gz) 87 Kb
  • LPC: Ligand-Protein Contacts for 3FCE
  • CSU: Contacts of Structural Units for 3FCE
  • Likely Quarternary Molecular Structure file(s) for 3FCE
  • Structure Factors (322 Kb)
  • Retrieve 3FCE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3FCE from S2C, [Save to disk]
  • Re-refined 3fce structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3FCE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3FCE
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3FCE, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3fce_A] [3fce]
  • SWISS-PROT database: [Q81G39]
  • Domain organization of [DLTA_BACCR] by SWISSPFAM
  • Other resources with information on 3FCE
  • Community annotation for 3FCE at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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