3FCX	Hydrolase	date	Nov 24, 2008
title	Crystal Structure Of Human Esterase D
authors	D.Wu, Y.Li, G.Song, D.Zhang, N.Shaw, Z.J.Liu
compound		source
Molecule: S-Formylglutathione Hydrolase Chain: A, B Fragment: G257d Synonym: Fgh, Esterase D Ec: 3.1.2.12 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Esd Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28
symmetry	Space Group: P 1 21 1	R_factor 0.176 R_Free 0.196
crystal cell	length a length b length c angle alpha angle beta angle gamma 51.542 70.724 65.014 90.00 108.84 90.00
method	X-Ray Diffraction	resolution	1.50 Å
ligand	CA, MG	enzyme	Hydrolase E.C.3.1.2.12 BRENDA
note	3FCX is a representative structure
Gene Ontology	Chain Function Process Component A, B
Primary reference	Crystal structure of human esterase D: a potential genetic marker of retinoblastoma., Wu D, Li Y, Song G, Zhang D, Shaw N, Liu ZJ, FASEB J. 2009 May;23(5):1441-6. Epub 2009 Jan 6. PMID:19126594

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (189 Kb) [Save to disk] Biological Unit Coordinates (3fcx.pdb1.gz) 183 Kb Biological Unit Coordinates (3fcx.pdb2.gz) 184 Kb LPC: Ligand-Protein Contacts for 3FCX CSU: Contacts of Structural Units for 3FCX Likely Quarternary Molecular Structure file(s) for 3FCX Structure Factors (478 Kb) Retrieve 3FCX in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3FCX from S2C, [Save to disk] Re-refined 3fcx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3FCX in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3FCX

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3FCX, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3fcx] [3fcx_B] [3fcx_A] SWISS-PROT database: [P10768] Domain organization of [ESTD_HUMAN] by SWISSPFAM

Other resources with information on 3FCX

Community annotation for 3FCX at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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