3FDL	Apoptosis	date	Nov 26, 2008
title	Bim Bh3 Peptide In Complex With Bcl-Xl
authors	W.D.Fairlie, E.F.Lee, B.J.Smith, P.E.Czabotar, P.M.Colman
compound		source
Molecule: Apoptosis Regulator Bcl-X Chain: A Fragment: Residue 1-209, Deletion Of Amino Acids 27 To 82 Synonym: Bcl-Xl, Bcl-2-Like 1 Protein Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Bcl-X Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21 (De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgex-6p3
Molecule: Bcl-2-Like Protein 11 Chain: B Fragment: Bh3 Domain, Unp Residues 141-166 Synonym: Bcl2-Interacting Mediator Of Cell Death Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630 Other_details: Chemically Synthesized
symmetry	Space Group: C 1 2 1	R_factor 0.160 R_Free 0.208
crystal cell	length a length b length c angle alpha angle beta angle gamma 74.111 35.684 62.760 90.00 111.54 90.00
method	X-Ray Diffraction	resolution	1.78 Å
note	3FDL is a representative structure
Gene Ontology	Chain Function Process Component A
Primary reference	High-Resolution Structural Characterization of a Helical alpha/beta-Peptide Foldamer Bound to the Anti-Apoptotic Protein Bcl-x(L)., Lee EF, Sadowsky JD, Smith BJ, Czabotar PE, Peterson-Kaufman KJ, Colman PM, Gellman SH, Fairlie WD, Angew Chem Int Ed Engl. 2009 Feb 19. PMID:19229915

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (37 Kb) [Save to disk] Biological Unit Coordinates (3fdl.pdb1.gz) 32 Kb Biological Unit Coordinates (3fdl.pdb2.gz) 63 Kb CSU: Contacts of Structural Units for 3FDL Likely Quarternary Molecular Structure file(s) for 3FDL Structure Factors (215 Kb) Retrieve 3FDL in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3FDL from S2C, [Save to disk] Re-refined 3fdl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3FDL in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3FDL

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3FDL, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3fdl_B] [3fdl_A] [3fdl] SWISS-PROT database: [Q07817] [O43521] Belongs to the bcl-2 (bcl-2) family according to TCDB. Belongs to the pro-apoptotic bcl-2-family protein bim (bim) family according to TCDB. Domain organization of [B2CL1_HUMAN] [B2L11_HUMAN] by SWISSPFAM Domains found in 3FDL: [BCL] [BH4 ] by SMART

Other resources with information on 3FDL

Community annotation for 3FDL at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---