3FDO Cell Cycle date Nov 26, 2008
title Structure Of Human Mdmx In Complex With High Affinity Peptid
authors A.L.Czarna, G.M.Popowicz, T.A.Holak
compound source
Molecule: Protein Mdm4
Chain: A
Fragment: P53 Binding Domain, Unp Residues 23-111
Synonym: P53-Binding Protein Mdm4, Mdm2-Like P53-Binding Pr Protein Mdmx, Double Minute 4 Protein;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mdm4, Mdmx
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-46

Molecule: Synthetic High Affinity Peptide
Chain: B
Engineered: Yes
Synthetic: Yes
Other_details: Synthetic Peptide Designed To Bind Mdmx
symmetry Space Group: C 1 2 1
R_factor 0.179 R_Free 0.247
crystal
cell
length a length b length c angle alpha angle beta angle gamma
69.230 30.950 50.420 90.00 124.41 90.00
method X-Ray Diffractionresolution 1.40 Å
ligand MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceHot, hotter, hottest., Domling A, Cell Cycle. 2009 Apr 15;8(8):1112. Epub 2009 Apr 15. PMID:19342883
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (44 Kb) [Save to disk]
  • Biological Unit Coordinates (3fdo.pdb1.gz) 34 Kb
  • Biological Unit Coordinates (3fdo.pdb2.gz) 6 Kb
  • Biological Unit Coordinates (3fdo.pdb3.gz) 76 Kb
  • Biological Unit Coordinates (3fdo.pdb4.gz) 73 Kb
  • LPC: Ligand-Protein Contacts for 3FDO
  • CSU: Contacts of Structural Units for 3FDO
  • Likely Quarternary Molecular Structure file(s) for 3FDO
  • Structure Factors (101 Kb)
  • Retrieve 3FDO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3FDO from S2C, [Save to disk]
  • Re-refined 3fdo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3FDO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3FDO
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3FDO, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3fdo_A] [3fdo_B] [3fdo]
  • SWISS-PROT database: [O15151]
  • Domain organization of [MDM4_HUMAN] by SWISSPFAM
    • Other resources with information on 3FDO
  • Community annotation for 3FDO at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science