3FDQ	Dna Binding Protein Dna	date	Nov 26, 2008
title	Recognition Of At-Rich Dna Binding Sites By The Mogr Repress
authors	A.Shen, D.E.Higgins, D.Panne
compound		source
Molecule: Motility Gene Repressor Mogr Chain: A, B Fragment: Dna Binding Domain: Unp Residues 1-162 Engineered: Yes		Organism_scientific: Listeria Monocytogenes Organism_taxid: 1639 Gene: Lmo0674, Mogr Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3)
Molecule: 5'-D(Aptptptptptptpapapapapapapapt Chain: C Engineered: Yes		Synthetic: Yes Other_details: Flaa Promoter Sequence
Molecule: 5'-D(Tpaptptptptptptptpapapapapapa Chain: D Engineered: Yes		Synthetic: Yes Other_details: Flaa Promoter Sequence
symmetry	Space Group: P 1 21 1	R_factor 0.217 R_Free 0.232
crystal cell	length a length b length c angle alpha angle beta angle gamma 48.344 93.597 60.768 90.00 113.41 90.00
method	X-Ray Diffraction	resolution	1.75 Å
Primary reference	Recognition of AT-Rich DNA Binding Sites by the MogR Repressor., Shen A, Higgins DE, Panne D, Structure. 2009 May 13;17(5):769-77. PMID:19446532

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (65 Kb) [Save to disk] Biological Unit Coordinates (3fdq.pdb1.gz) 61 Kb CSU: Contacts of Structural Units for 3FDQ Likely Quarternary Molecular Structure file(s) for 3FDQ Structure Factors (364 Kb) Retrieve 3FDQ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3FDQ from S2C, [Save to disk] Re-refined 3fdq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3FDQ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3FDQ

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3FDQ, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3fdq_A] [3fdq_D] [3fdq_B] [3fdq_C] [3fdq] SWISS-PROT database: [Q8Y960] Domain organization of [MOGR_LISMO] by SWISSPFAM

Other resources with information on 3FDQ

Community annotation for 3FDQ at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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