3FEO Metal Binding Protein date Nov 30, 2008
title The Crystal Structure Of Mbtd1
authors M.F.Amaya, J.Eryilmaz, I.Kozieradzki, A.M.Edwards, C.H.Arrowsmit J.Weigelt, C.Bountra, A.Bochkarev, J.Min, Structural Genomics C (Sgc)
compound source
Molecule: Mbt Domain-Containing Protein 1
Chain: A, B
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mbtd1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.207 R_Free 0.274
crystal
cell
length a length b length c angle alpha angle beta angle gamma
70.310 100.904 135.303 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
Primary referenceStructural studies of a four-MBT repeat protein MBTD1., Eryilmaz J, Pan P, Amaya MF, Allali-Hassani A, Dong A, Adams-Cioaba MA, Mackenzie F, Vedadi M, Min J, PLoS One. 2009 Oct 20;4(10):e7274. PMID:19841675
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (133 Kb) [Save to disk]
  • Biological Unit Coordinates (3feo.pdb1.gz) 66 Kb
  • Biological Unit Coordinates (3feo.pdb2.gz) 63 Kb
  • CSU: Contacts of Structural Units for 3FEO
  • Likely Quarternary Molecular Structure file(s) for 3FEO
  • Structure Factors (258 Kb)
  • Retrieve 3FEO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3FEO from S2C, [Save to disk]
  • Re-refined 3feo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3FEO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • On AstexViewer, from MSD-EBI (viewer documentation).
  • On RasMol (Install RasMol freeware) Here's help on how to use RasMol.
    • Visual 3D analysis of 3FEO
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3FEO, from MSDmotif at EBI
  • Fold representative 3feo from FSSP and Dali (Families of Structurally Similar Proteins)
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3feo_A] [3feo_B]
  • SWISS-PROT database: [Q05BQ5]
  • Domain organization of [MBTD1_HUMAN] by SWISSPFAM
  • Domain found in 3FEO: [MBT ] by SMART
  • Alignments of the sequence of 3FEO with the sequences similar proteins can be viewed for 3FEO's classification [MBTD1_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [MBTD1_HUMAN] at ProtoMap. Click on the Cluster number.
    • Other resources with information on 3FEO
  • Community annotation for 3FEO at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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