3FET Electron Transport date Dec 01, 2008
title Crystal Structure Of The Electron Transfer Flavoprotein Subu Related Protein Ta0212 From Thermoplasma Acidophilum
authors Y.Kim, C.Tesar, K.Souvong, S.Moy, A.Joachimiak, Midwest Center Fo Structural Genomics (Mcsg)
compound source
Molecule: Electron Transfer Flavoprotein Subunit Alpha Rela Protein;
Chain: A, B, C, D
Fragment: Residues 1-163
Engineered: Yes
 Organism_scientific: Thermoplasma Acidophilum
Organism_taxid: 2303
Strain: Dsm1728
Gene: Ta0212
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21de3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmcsg7
symmetry Space Group: P 1 21 1
R_factor 0.179 R_Free 0.232
crystal
cell
length a length b length c angle alpha angle beta angle gamma
48.696 115.358 63.462 90.00 109.79 90.00
method X-Ray Diffractionresolution 2.05 Å
ligand MSE enzyme
note 3FET is a representative structure
Primary referenceThe catalytic domain of the germination-specific lytic transglycosylasesleb from bacillus anthracisdisplays a unique active site topology., Jing X, Robinson HR, Heffron J, Popham DL, Schubot FD, Proteins. 2012 Jul 7. doi: 10.1002/prot.24140. PMID:22777830
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (116 Kb) [Save to disk]
  • Biological Unit Coordinates (3fet.pdb1.gz) 56 Kb
  • Biological Unit Coordinates (3fet.pdb2.gz) 57 Kb
  • LPC: Ligand-Protein Contacts for 3FET
  • CSU: Contacts of Structural Units for 3FET
  • Likely Quarternary Molecular Structure file(s) for 3FET
  • Structure Factors (716 Kb)
  • Retrieve 3FET in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3FET from S2C, [Save to disk]
  • Re-refined 3fet structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3FET in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3FET
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3FET, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3fet_A] [3fet_D] [3fet_B] [3fet] [3fet_C]
  • SWISS-PROT database: [Q9HLL5]
  • Domain organization of [Q9HLL5_THEAC] by SWISSPFAM
    • Other resources with information on 3FET
  • Community annotation for 3FET at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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