3FFY Structural Genomics, Unknown Function date Dec 04, 2008
title Putative Tetrapyrrole (Corrinporphyrin) Methyltransferase F Bacteroides Fragilis.
authors J.Osipiuk, L.Volkart, G.Cobb, Y.Kim, A.Joachimiak, Midwest Center Structural Genomics (Mcsg)
compound source
Molecule: Putative Tetrapyrrole (Corrinporphyrin) Methylas
Chain: A
Engineered: Yes
 Organism_scientific: Bacteroides Fragilis
Organism_taxid: 272559
Strain: Nctc 9343
Gene: Bf0585
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmcsg19
symmetry Space Group: P 41 21 2
R_factor 0.206 R_Free 0.231
crystal
cell
length a length b length c angle alpha angle beta angle gamma
60.536 60.536 96.065 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand MSE, SO4 enzyme
note 3FFY is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (25 Kb) [Save to disk]
  • Biological Unit Coordinates (3ffy.pdb1.gz) 39 Kb
  • LPC: Ligand-Protein Contacts for 3FFY
  • CSU: Contacts of Structural Units for 3FFY
  • Likely Quarternary Molecular Structure file(s) for 3FFY
  • Structure Factors (191 Kb)
  • Retrieve 3FFY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3FFY from S2C, [Save to disk]
  • Re-refined 3ffy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3FFY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3FFY
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3FFY, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ffy_A] [3ffy]
  • SWISS-PROT database: [Q5LHP3]
  • Domain organization of [Q5LHP3_BACFN] by SWISSPFAM
    • Other resources with information on 3FFY
  • Community annotation for 3FFY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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