3FGG Structural Genomics, Unknown Function date Dec 05, 2008
title Crystal Structure Of Putative Ecf-Type Sigma Factor Negative From Bacillus Cereus
authors Y.Kim, B.Nocek, N.Maltseva, G.Joachimiak, J.Du, R.Jedrzejczak, A.Joachimiak, Midwest Center For Structural Genomics (Mcsg)
compound source
Molecule: Uncharacterized Protein Bce2196
Chain: A, B
Fragment: Bce_2196, 67-226
Engineered: Yes
 Organism_scientific: Bacillus Cereus
Organism_taxid: 222523
Strain: Atcc 10987
Gene: Bce_2196
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21de3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmcsg9
symmetry Space Group: P 1 21 1
R_factor 0.214 R_Free 0.259
crystal
cell
length a length b length c angle alpha angle beta angle gamma
67.849 63.055 70.374 90.00 115.52 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand GOL, MSE, ZN enzyme
Gene BCE
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (61 Kb) [Save to disk]
  • Biological Unit Coordinates (3fgg.pdb1.gz) 55 Kb
  • Biological Unit Coordinates (3fgg.pdb2.gz) 55 Kb
  • LPC: Ligand-Protein Contacts for 3FGG
  • CSU: Contacts of Structural Units for 3FGG
  • Likely Quarternary Molecular Structure file(s) for 3FGG
  • Structure Factors (397 Kb)
  • Retrieve 3FGG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3FGG from S2C, [Save to disk]
  • Re-refined 3fgg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3FGG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3FGG
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3FGG, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3fgg] [3fgg_B] [3fgg_A]
  • SWISS-PROT database: [Q739E5]
  • Domain organization of [Q739E5_BACC1] by SWISSPFAM
    • Other resources with information on 3FGG
  • Community annotation for 3FGG at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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