3FHK Structural Genomics, Unknown Function date Dec 09, 2008
title Crystal Structure Of Apc1446, B.Subtilis Yphp Disulfide Isom
authors U.Derewenda, T.Boczek, D.R.Cooper, M.Yu, L.Hung, Z.S.Derewenda, In Center For Structure And Function Innovation (Isfi)
compound source
Molecule: Upf0403 Protein Yphp
Chain: A, D, E, F
Engineered: Yes
Mutation: Yes
 Organism_scientific: Bacillus Subtilis
Organism_taxid: 1423
Gene: Bsu21860, Yphp
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
symmetry Space Group: P 41 21 2
R_factor 0.190 R_Free 0.246
crystal
cell
length a length b length c angle alpha angle beta angle gamma
68.161 68.161 302.024 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand SO4 enzyme
Primary referenceStructure and Function of Bacillus subtilis YphP, a Prokaryotic Disulfide Isomerase with a CXC Catalytic Motif (,)., Derewenda U, Boczek T, Gorres KL, Yu M, Hung LW, Cooper D, Joachimiak A, Raines RT, Derewenda ZS, Biochemistry. 2009 Aug 21. PMID:19653655
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (201 Kb) [Save to disk]
  • Biological Unit Coordinates (3fhk.pdb1.gz) 192 Kb
  • Biological Unit Coordinates (3fhk.pdb2.gz) 97 Kb
  • Biological Unit Coordinates (3fhk.pdb3.gz) 144 Kb
  • Biological Unit Coordinates (3fhk.pdb4.gz) 97 Kb
  • Biological Unit Coordinates (3fhk.pdb5.gz) 98 Kb
  • LPC: Ligand-Protein Contacts for 3FHK
  • CSU: Contacts of Structural Units for 3FHK
  • Structure Factors (617 Kb)
  • Retrieve 3FHK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3FHK from S2C, [Save to disk]
  • Re-refined 3fhk structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3FHK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3FHK
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3FHK, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3fhk_E] [3fhk_D] [3fhk_F] [3fhk_A] [3fhk]
  • SWISS-PROT database: [P54170]
  • Domain organization of [YPHP_BACSU] by SWISSPFAM
    • Other resources with information on 3FHK
  • Community annotation for 3FHK at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science