3FHN Transport Protein date Dec 09, 2008
title Structure Of Tip20p
authors A.Tripathi, Y.Ren, P.D.Jeffrey, F.M.Hughson
compound source
Molecule: Protein Transport Protein Tip20
Chain: A, B, C, D
Engineered: Yes
 Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Yeast
Organism_taxid: 4932
Gene: Tip20, Tip1, Ygl145w
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor 0.220 R_Free 0.265
crystal
cell
length a length b length c angle alpha angle beta angle gamma
85.480 111.620 149.840 77.09 88.12 70.35
method X-Ray Diffractionresolution 3.00 Å
ligand MSE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceStructural characterization of Tip20p and Dsl1p, subunits of the Dsl1p vesicle tethering complex., Tripathi A, Ren Y, Jeffrey PD, Hughson FM, Nat Struct Mol Biol. 2009 Feb;16(2):114-23. Epub 2009 Jan 18. PMID:19151722
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (451 Kb) [Save to disk]
  • Biological Unit Coordinates (3fhn.pdb1.gz) 115 Kb
  • Biological Unit Coordinates (3fhn.pdb2.gz) 114 Kb
  • Biological Unit Coordinates (3fhn.pdb3.gz) 115 Kb
  • Biological Unit Coordinates (3fhn.pdb4.gz) 114 Kb
  • LPC: Ligand-Protein Contacts for 3FHN
  • CSU: Contacts of Structural Units for 3FHN
  • Likely Quarternary Molecular Structure file(s) for 3FHN
  • Structure Factors (751 Kb)
  • Retrieve 3FHN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3FHN from S2C, [Save to disk]
  • Re-refined 3fhn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3FHN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3FHN
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3FHN, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3fhn_A] [3fhn] [3fhn_B] [3fhn_D] [3fhn_C]
  • SWISS-PROT database: [P33891]
  • Domain organization of [TIP20_YEAST] by SWISSPFAM
    • Other resources with information on 3FHN
  • Community annotation for 3FHN at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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