3FJE Hormone date Dec 14, 2008
title Crystal Structure Of C83s Mutant Of Human Acidic Fibroblast Growth Factor
authors M.Blaber, J.Lee
compound source
Molecule: Heparin-Binding Growth Factor 1
Chain: A, B
Synonym: Hbgf-1, Acidic Fibroblast Growth Factor, Afgf, Beta-Endothelial Cell Growth Factor, Ecgf-Beta;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fgf1, Fgfa
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Pet21a(+)
symmetry Space Group: C 2 2 21
R_factor 0.198 R_Free 0.235
crystal
cell
length a length b length c angle alpha angle beta angle gamma
75.414 94.393 108.654 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand FMT, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural basis of conserved cysteine in the fibroblast growth factor family: evidence for a vestigial half-cystine., Lee J, Blaber M, J Mol Biol. 2009 Oct 16;393(1):128-39. Epub 2009 Aug 13. PMID:19683004
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (54 Kb) [Save to disk]
  • Biological Unit Coordinates (3fje.pdb1.gz) 26 Kb
  • Biological Unit Coordinates (3fje.pdb2.gz) 26 Kb
  • LPC: Ligand-Protein Contacts for 3FJE
  • CSU: Contacts of Structural Units for 3FJE
  • Structure Factors (342 Kb)
  • Retrieve 3FJE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3FJE from S2C, [Save to disk]
  • Re-refined 3fje structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3FJE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3FJE
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3FJE, from MSDmotif at EBI
  • Fold representative 3fje from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3fje] [3fje_B] [3fje_A]
  • SWISS-PROT database: [P05230]
  • Domain organization of [FGF1_HUMAN] by SWISSPFAM
  • Domain found in 3FJE: [FGF ] by SMART
  • Alignments of the sequence of 3FJE with the sequences similar proteins can be viewed for 3FJE's classification [FGF1_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [FGF1_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 3FJE
  • Community annotation for 3FJE at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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