3FKC Transcription date Dec 16, 2008
title Crystal Structure Of Human Zinc Finger And Btb Domain Contai
authors P.Filippakopoulos, A.Bullock, T.Keates, N.Burgess-Brown, J.Muniz Delft, C.H.Arrowsmith, A.M.Edwards, J.Weigelt, C.Bountra, S.Knap Structural Genomics Consortium (Sgc)
compound source
Molecule: Transcriptional Regulator Kaiso
Chain: A
Fragment: Unp Residues 1-116, Btb Domain
Synonym: Zinc Finger And Btb Domain-Containing Protein 33
Engineered: Yes
Mutation: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Kaiso, Zbtb33, Znf348
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)-R3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic28-Bsa4
symmetry Space Group: P 62 2 2
R_factor 0.176 R_Free 0.195
crystal
cell
length a length b length c angle alpha angle beta angle gamma
118.358 118.358 38.981 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.70 Å
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (27 Kb) [Save to disk]
  • Biological Unit Coordinates (3fkc.pdb1.gz) 22 Kb
  • Biological Unit Coordinates (3fkc.pdb2.gz) 42 Kb
  • CSU: Contacts of Structural Units for 3FKC
  • Structure Factors (229 Kb)
  • Retrieve 3FKC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3FKC from S2C, [Save to disk]
  • Re-refined 3fkc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3FKC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3FKC
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3FKC, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3fkc] [3fkc_A]
  • SWISS-PROT database: [Q86T24]
  • Domain organization of [KAISO_HUMAN] by SWISSPFAM
  • Domain found in 3FKC: [BTB ] by SMART
    • Other resources with information on 3FKC
  • Community annotation for 3FKC at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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