3FM0 Biosynthetic Protein date Dec 19, 2008
title Crystal Structure Of Wd40 Protein Ciao1
authors A.Dong, M.Ravichandran, L.Crombet, D.Cossar, A.M.Edwards, C.H.Arr J.Weigelt, C.Bountra, A.Bochkarev, J.Min, H.Ouyang, Structural G Consortium (Sgc)
compound source
Molecule: Protein Ciao1
Chain: A
Synonym: Wd Repeat-Containing Protein 39
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606
Gene: Ciao1, Wdr39
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 Rosetta-R3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a
symmetry Space Group: P 1 21 1
R_factor 0.160 R_Free 0.196
crystal
cell
length a length b length c angle alpha angle beta angle gamma
41.682 74.640 49.481 90.00 105.05 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure and function of WD40 domain proteins., Xu C, Min J, Protein Cell. 2011 Mar;2(3):202-14. Epub 2011 Apr 6. PMID:21468892
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (63 Kb) [Save to disk]
  • Biological Unit Coordinates (3fm0.pdb1.gz) 59 Kb
  • LPC: Ligand-Protein Contacts for 3FM0
  • CSU: Contacts of Structural Units for 3FM0
  • Likely Quarternary Molecular Structure file(s) for 3FM0
  • Structure Factors (457 Kb)
  • Retrieve 3FM0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3FM0 from S2C, [Save to disk]
  • Re-refined 3fm0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3FM0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3FM0
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3FM0, from MSDmotif at EBI
  • Fold representative 3fm0 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3fm0] [3fm0_A]
  • SWISS-PROT database: [O76071]
  • Domain organization of [CIAO1_HUMAN] by SWISSPFAM
  • Domain found in 3FM0: [WD40 ] by SMART
  • Other resources with information on 3FM0
  • Community annotation for 3FM0 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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