3FM8 Transport Protein Hydrolase Activator date Dec 19, 2008
title Crystal Structure Of Full Length Centaurin Alpha-1 Bound Wit Domain Of Kif13b (Capri Target)
authors L.Shen, Y.Tong, W.Tempel, F.Mackenzie, C.H.Arrowsmith, A.M.Edward C.Bountra, J.Weigelt, A.Bochkarev, H.Park, Structural Genomics Consortium (Sgc)
compound source
Molecule: Kinesin-Like Protein Kif13b
Chain: A, B
Fragment: Fha Domain
Synonym: Kinesin-Like Protein Gakin
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Kif13b, Gakin, Kiaa0639
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21-Codonplus(De3)-Ril
Expression_system_plasmid: Pet28-Mhl (Gi:134105571)

Molecule: Centaurin-Alpha-1
Chain: C, D
Synonym: Putative Mapk-Activating Protein Pm25
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Centa1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21-Codonplus(De3)-Ril
Expression_system_plasmid: Pet28-Mhl (Gi:134105571)
symmetry Space Group: P 41 21 2
R_factor 0.231 R_Free 0.272
crystal
cell
length a length b length c angle alpha angle beta angle gamma
115.632 115.632 189.291 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand SO4, UNX, ZN enzyme
note 3FM8 is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
D, C


Primary referencePhosphorylation-independent dual-site binding of the FHA domain of KIF13 mediates phosphoinositide transport via centaurin {alpha}1., Tong Y, Tempel W, Wang H, Yamada K, Shen L, Senisterra GA, Mackenzie F, Chishti AH, Park HW, Proc Natl Acad Sci U S A. 2010 Nov 5. PMID:21057110
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (152 Kb) [Save to disk]
  • Biological Unit Coordinates (3fm8.pdb1.gz) 76 Kb
  • Biological Unit Coordinates (3fm8.pdb2.gz) 73 Kb
  • LPC: Ligand-Protein Contacts for 3FM8
  • CSU: Contacts of Structural Units for 3FM8
  • Structure Factors (868 Kb)
  • Retrieve 3FM8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3FM8 from S2C, [Save to disk]
  • Re-refined 3fm8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3FM8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3FM8
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3FM8, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3fm8_D] [3fm8_B] [3fm8_A] [3fm8_C] [3fm8]
  • SWISS-PROT database: [O75689] [Q9NQT8]
  • Domain organization of [ADAP1_HUMAN] [KI13B_HUMAN] by SWISSPFAM
  • Domains found in 3FM8: [ArfGap] [FHA] [PH ] by SMART
  • Other resources with information on 3FM8
  • Community annotation for 3FM8 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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