3FMG	Immune System	date	Dec 22, 2008
title	Structure Of Rotavirus Outer Capsid Protein Vp7 Trimer In Co A Neutralizing Fab
authors	S.T.Aoki, E.C.Settembre, S.D.Trask, H.B.Greenberg, S.C.Harrison, P.R.Dormitzer
compound		source
Molecule: Fab Of Neutralizing Antibody 4f8, Light Chain Chain: L		Organism_scientific: Mus Musculus Organism_taxid: 10090 Other_details: Hybridoma
Molecule: Fab Of Neutralizing Antibody 4f8, Heavy Chain Chain: H		Organism_scientific: Mus Musculus Organism_taxid: 10090 Other_details: Hybridoma
Molecule: Glycoprotein Vp7 Chain: A Fragment: Trimer Subunit Synonym: Serotype-Specific Antigen, Outer Capsid Glycoprote Engineered: Yes		Organism_scientific: Simian Rotavirus Organism_taxid: 10922 Strain: Rrv Gene: S9, Vp7 Expression_system: Spodoptera Frugiperda Expression_system_taxid: 7108 Expression_system_strain: Sf9
symmetry	Space Group: P 41 3 2	R_factor 0.224 R_Free 0.238
crystal cell	length a length b length c angle alpha angle beta angle gamma 244.179 244.179 244.179 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	3.40 Å
ligand	CA	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	Structure of rotavirus outer-layer protein VP7 bound with a neutralizing Fab., Aoki ST, Settembre EC, Trask SD, Greenberg HB, Harrison SC, Dormitzer PR, Science. 2009 Jun 12;324(5933):1444-7. PMID:19520960

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (103 Kb) [Save to disk] Biological Unit Coordinates (3fmg.pdb1.gz) 285 Kb LPC: Ligand-Protein Contacts for 3FMG CSU: Contacts of Structural Units for 3FMG Likely Quarternary Molecular Structure file(s) for 3FMG Structure Factors (296 Kb) Retrieve 3FMG in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3FMG from S2C, [Save to disk] Re-refined 3fmg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3FMG in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3FMG

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3FMG, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3fmg_L] [3fmg_A] [3fmg] [3fmg_H] SWISS-PROT database: [P12476] Domain organization of [VP7_ROTRH] by SWISSPFAM Domains found in 3FMG: [IG_like] [IGv ] by SMART

Other resources with information on 3FMG

Community annotation for 3FMG at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---