3FNV Metal Binding Protein date Dec 26, 2008
title Crystal Structure Of Miner1: The Redox-Active 2fe-2s Protein In Wolfram Syndrome 2
authors A.R.Conlan, H.L.Axelrod, A.E.Cohen, E.C.Abresch, D.Yee, J.Zuris, R.Nechushtai, P.A.Jennings, M.L.Paddock
compound source
Molecule: Cdgsh Iron Sulfur Domain-Containing Protein 2
Chain: A, B
Fragment: C-Terminal Water-Soluble Domain: Unp Residues 57-
Synonym: Endoplasmic Reticulum Intermembrane Small Protein, Related 1 Protein, Miner1;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cdgsh2, Cisd2, Eris, Zcd2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a(+)
symmetry Space Group: P 21 21 21
R_factor 0.170 R_Free 0.216
crystal
cell
length a length b length c angle alpha angle beta angle gamma
40.904 48.579 74.104 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand FES enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystal Structure of Miner1: The Redox-active 2Fe-2S Protein Causative in Wolfram Syndrome 2., Conlan AR, Axelrod HL, Cohen AE, Abresch EC, Zuris J, Yee D, Nechushtai R, Jennings PA, Paddock ML, J Mol Biol. 2009 Jul 4. PMID:19580816
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (28 Kb) [Save to disk]
  • Biological Unit Coordinates (3fnv.pdb1.gz) 23 Kb
  • LPC: Ligand-Protein Contacts for 3FNV
  • CSU: Contacts of Structural Units for 3FNV
  • Structure Factors (7569 Kb)
  • Retrieve 3FNV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3FNV from S2C, [Save to disk]
  • Re-refined 3fnv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3FNV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3FNV
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3FNV, from MSDmotif at EBI
  • Fold representative 3fnv from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3fnv_A] [3fnv_B] [3fnv]
  • SWISS-PROT database: [Q8N5K1]
  • Domain organization of [CISD2_HUMAN] by SWISSPFAM
  • Domain found in 3FNV: [ZnF_CDGSH ] by SMART
  • Other resources with information on 3FNV
  • Community annotation for 3FNV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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