3FPD	Transferase	date	Jan 05, 2009
title	G9a-Like Protein Lysine Methyltransferase Inhibition By Bix-
authors	Y.Chang, X.Zhang, J.R.Horton, X.Cheng
compound		source
Molecule: Histone-Lysine N-Methyltransferase, H3 Lysine-9 S Chain: A, B Fragment: Unp Residues 975-1235, Set Domain Synonym: Histone H3-K9 Methyltransferase 5, H3-K9-Hmtase 5, Euchromatic Histone-Lysine N-Methyltransferase 1, Eu-Hmtase Like Protein 1, Glp1, Lysine N-Methyltransferase 1d; Ec: 2.1.1.43 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ehmt1, Euhmtase1, Kiaa1876, Kmt1d Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pxc681
symmetry	Space Group: P 21 21 21	R_factor 0.221 R_Free 0.262
crystal cell	length a length b length c angle alpha angle beta angle gamma 75.300 95.200 101.700 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.40 Å
ligand	Q4A, SAH, ZN BindingDB	enzyme	Transferase E.C.2.1.1.43 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structural basis for G9a-like protein lysine methyltransferase inhibition by BIX-01294., Chang Y, Zhang X, Horton JR, Upadhyay AK, Spannhoff A, Liu J, Snyder JP, Bedford MT, Cheng X, Nat Struct Mol Biol. 2009 Mar;16(3):312-7. Epub 2009 Feb 15. PMID:19219047

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (96 Kb) [Save to disk] Biological Unit Coordinates (3fpd.pdb1.gz) 89 Kb LPC: Ligand-Protein Contacts for 3FPD CSU: Contacts of Structural Units for 3FPD Likely Quarternary Molecular Structure file(s) for 3FPD Structure Factors (372 Kb) Retrieve 3FPD in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3FPD from S2C, [Save to disk] Re-refined 3fpd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3FPD in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3FPD

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3FPD, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3fpd_B] [3fpd_A] [3fpd] SWISS-PROT database: [Q9H9B1] Domain organization of [EHMT1_HUMAN] by SWISSPFAM Domains found in 3FPD: [PreSET] [SET ] by SMART

Other resources with information on 3FPD

Community annotation for 3FPD at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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