3FPD Transferase date Jan 05, 2009
title G9a-Like Protein Lysine Methyltransferase Inhibition By Bix- 01294
authors Y.Chang, X.Zhang, J.R.Horton, X.Cheng
compound source
Molecule: Histone-Lysine N-Methyltransferase, H3 Lysine-9 Specific 5;
Chain: A, B
Fragment: Unp Residues 975-1235, Set Domain
Synonym: Histone H3-K9 Methyltransferase 5, H3-K9-Hmtase 5, Euchromatic Histone-Lysine N-Methyltransferase 1, Eu- Hmtase1, G9a-Like Protein 1, Glp1, Lysine N- Methyltransferase 1d;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ehmt1, Euhmtase1, Kiaa1876, Kmt1d
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pxc681
symmetry Space Group: P 21 21 21
R_factor 0.221 R_Free 0.262
length a length b length c angle alpha angle beta angle gamma
75.300 95.200 101.700 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand Q4A, SAH, ZN BindingDB enzyme Transferase E.C. BRENDA
A, B

Primary referenceStructural basis for G9a-like protein lysine methyltransferase inhibition by BIX-01294., Chang Y, Zhang X, Horton JR, Upadhyay AK, Spannhoff A, Liu J, Snyder JP, Bedford MT, Cheng X, Nat Struct Mol Biol. 2009 Mar;16(3):312-7. Epub 2009 Feb 15. PMID:19219047
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (97 Kb) [Save to disk]
  • Biological Unit Coordinates (3fpd.pdb1.gz) 91 Kb
  • LPC: Ligand-Protein Contacts for 3FPD
  • CSU: Contacts of Structural Units for 3FPD
  • Likely Quarternary Molecular Structure file(s) for 3FPD
  • Structure Factors (372 Kb)
  • Retrieve 3FPD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3FPD from S2C, [Save to disk]
  • Re-refined 3fpd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3FPD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3FPD
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3FPD, from MSDmotif at EBI
  • Fold representative 3fpd from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3fpd_B] [3fpd_A] [3fpd]
  • SWISS-PROT database: [Q9H9B1]
  • Domain organization of [EHMT1_HUMAN] by SWISSPFAM
  • Domains found in 3FPD: [PreSET] [SET ] by SMART
  • Other resources with information on 3FPD
  • Community annotation for 3FPD at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science