3FPL Oxidoreductase date Jan 05, 2009
title Chimera Of Alcohol Dehydrogenase By Exchange Of The Cofactor Domain Res 153-295 Of C. Beijerinckii Adh By T. Brockii Adh
authors F.Felix, E.Goihberg, L.Shimon, Y.Burstein
compound source
Molecule: Nadp-Dependent Alcohol Dehydrogenase
Chain: A
Synonym: Cbadh
Ec: 1.1.1.2
Engineered: Yes
Other_details: Chimera Of Alcohol Dehydrogenase By Exchange Cofactor Binding Domain Res 153-295 Of Clostridium Beijerin By Thermoanaerobium Brockii Adh
Organism_scientific: Clostridium Beijerinckii, Thermoanaero Brockii;
Organism_common: Clostridium Mp, Thermoanaerobium Brockii
Organism_taxid: 1520, 29323
Gene: Adh1, Adh1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Tg-I
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Bs-P58
symmetry Space Group: I 2 3
R_factor 0.122 R_Free 0.172
crystal
cell
length a length b length c angle alpha angle beta angle gamma
129.477 129.477 129.477 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand CAC, CL, EDO, PGE, ZN enzyme Oxidoreductase E.C.1.1.1.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceBiochemical and Structural Properties of Chimeras Constructed by Exchange of Cofactor-Binding Domains in Alcohol Dehydrogenases from Thermophilic and Mesophilic Microorganisms., Goihberg E, Peretz M, Tel-Or S, Dym O, Shimon L, Frolow F, Burstein Y, Biochemistry. 2010 Feb 9. PMID:20102159
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (68 Kb) [Save to disk]
  • Biological Unit Coordinates (3fpl.pdb1.gz) 247 Kb
  • LPC: Ligand-Protein Contacts for 3FPL
  • CSU: Contacts of Structural Units for 3FPL
  • Structure Factors (296 Kb)
  • Retrieve 3FPL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3FPL from S2C, [Save to disk]
  • Re-refined 3fpl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3FPL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3FPL
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3FPL, from MSDmotif at EBI
  • Fold representative 3fpl from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3fpl_A] [3fpl]
  • SWISS-PROT database: [P25984] [P14941]
  • Domain organization of [ADH_CLOBE] [ADH_THEBR] by SWISSPFAM
  • Other resources with information on 3FPL
  • Community annotation for 3FPL at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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