3FPU Immune System date Jan 06, 2009
title The Crystallographic Structure Of The Complex Between Evasin Ccl3
authors J.P.Shaw, J.M.Dias
compound source
Molecule: Evasin-1
Chain: A
Engineered: Yes
Organism_scientific: Rhipicephalus Sanguineus
Organism_common: Brown Dog Tick
Organism_taxid: 34632
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_strain: Sf9
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pfastbac

Molecule: C-C Motif Chemokine 3
Chain: B
Synonym: Small-Inducible Cytokine A3, Macrophage Inflammato 1-Alpha, Mip-1-Alpha, Tonsillar Lymphocyte Ld78 Alpha Prote Switch Regulatory Protein 19-1, G0s19-1 Protein, Sis-Beta, Mip-1-Alpha(4-69), Ld78-Alpha(4-69);
Engineered: Yes
Mutation: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet30a
symmetry Space Group: P 43 3 2
R_factor 0.231 R_Free 0.285
crystal
cell
length a length b length c angle alpha angle beta angle gamma
104.384 104.384 104.384 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.76 Å
ligand NI enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


B
  • CCR1 chemokine receptor bind...
  • chemoattractant activity


  • Primary referenceStructural basis of chemokine sequestration by a tick chemokine binding protein: the crystal structure of the complex between Evasin-1 and CCL3., Dias JM, Losberger C, Deruaz M, Power CA, Proudfoot AE, Shaw JP, PLoS One. 2009 Dec 30;4(12):e8514. PMID:20041127
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (37 Kb) [Save to disk]
  • Biological Unit Coordinates (3fpu.pdb1.gz) 31 Kb
  • LPC: Ligand-Protein Contacts for 3FPU
  • CSU: Contacts of Structural Units for 3FPU
  • Structure Factors (290 Kb)
  • Retrieve 3FPU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3FPU from S2C, [Save to disk]
  • Re-refined 3fpu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3FPU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3FPU
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3FPU, from MSDmotif at EBI
  • Fold representative 3fpu from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3fpu] [3fpu_A] [3fpu_B]
  • SWISS-PROT database: [P10147] [P0C8E7]
  • Domain organization of [CCL3_HUMAN] [EVA1_RHISA] by SWISSPFAM
  • Domain found in 3FPU: [SCY ] by SMART
  • Other resources with information on 3FPU
  • Community annotation for 3FPU at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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