3FR0 Transferase date Jan 08, 2009
title Human Glucokinase In Complex With 2-Amino Benzamide Activator
authors K.Kamata
compound source
Molecule: Glucokinase
Chain: A
Fragment: Enzyme, Unp Residues 12-466
Synonym: Hexokinase Type Iv, Hk Iv, Hexokinase-4, Hk4, Hexokinase-D;
Ec: 2.7.1.2
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Dh5alfa
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pflag-Ctc
symmetry Space Group: P 65 2 2
R_factor 0.211 R_Free 0.274
crystal
cell
length a length b length c angle alpha angle beta angle gamma
80.147 80.147 323.170 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.70 Å
ligand AJB, GLC, NA BindingDB enzyme Transferase E.C.2.7.1.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceIdentification of novel and potent 2-amino benzamide derivatives as allosteric glucokinase activators., Nishimura T, Iino T, Mitsuya M, Bamba M, Watanabe H, Tsukahara D, Kamata K, Sasaki K, Ohyama S, Hosaka H, Futamura M, Nagata Y, Eiki JI, Bioorg Med Chem Lett. 2009 Jan 21. PMID:19188063
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (81 Kb) [Save to disk]
  • Biological Unit Coordinates (3fr0.pdb1.gz) 76 Kb
  • LPC: Ligand-Protein Contacts for 3FR0
  • CSU: Contacts of Structural Units for 3FR0
  • Likely Quarternary Molecular Structure file(s) for 3FR0
  • Structure Factors (142 Kb)
  • Retrieve 3FR0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3FR0 from S2C, [Save to disk]
  • Re-refined 3fr0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3FR0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3FR0
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3FR0, from MSDmotif at EBI
  • Fold representative 3fr0 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3fr0] [3fr0_A]
  • SWISS-PROT database: [P35557]
  • Domain organization of [HXK4_HUMAN] by SWISSPFAM
  • Alignments of the sequence of 3FR0 with the sequences similar proteins can be viewed for 3FR0's classification [HXK4_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [HXK4_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 3FR0
  • Community annotation for 3FR0 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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